Functional clusters

Information

  • Type Gene Ontology
  • Description ribosome

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 3 CH_acertr_415 8 41 0.000299911
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 3 CH_arhy_592 6 14 0.00033943
Brassica oleracea C7 3 CH_bol_219 5 5 0.000014291
Brassica rapa Brapa_scaffold_58 3 CH_bra_32 18 74 0.00000000000674449
Camellia sinensis var. sinensis Chr12 3 CH_camsi_127 10 23 0.0000000000908014
Eucalyptus grandis Chr06 3 CH_egr_263 11 31 0.0000000000141393
Lupinus albus Lalb_Chr23 3 CH_lal_69 9 11 0.000000000447183
Malus domestica Chr02 3 CH_mdo_452 10 67 0.0000951927
Medicago truncatula chr5 3 CH_mtr_182 7 8 0.000000000515698
Medicago truncatula chr3 3 CH_mtr_584 6 18 0.000149961
Nelumbo nucifera chr1 3 CH_nnu_332 6 21 0.00099865
Oryza sativa ssp. japonica chr07 3 CH_osa_365 5 8 0.00016757
Physcomitrium patens Chr02 3 CH_ppa_12 8 9 0.000000000272668
Salvia bowleyana GWHASIU00000002 3 CH_sbo_83 11 26 0.00000000000248618
Sapria himalayana scaffold46_4242896 3 CH_shi_129 4 5 0.0000279924
Sapria himalayana scaffold149_526024 3 CH_shi_33 8 23 0.000000000370667
Solanum lycopersicum SL4.0ch09 3 CH_sly_153 8 12 0.0000000281515
Solanum lycopersicum SL4.0ch04 3 CH_sly_34 12 12 2.38806e-18
Solanum pennellii Spenn-ch02 3 CH_spe_102 6 6 0.00000000526513
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_153 5 5 0.00000245712
Acer truncatum chr13 4 CH_acertr_415 8 41 0.000299911
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 4 CH_arhy_592 6 14 0.00033943
Brassica oleracea C7 4 CH_bol_219 5 5 0.000014291
Brassica rapa Brapa_scaffold_58 4 CH_bra_32 18 74 0.00000000000674449
Camellia sinensis var. sinensis Chr12 4 CH_camsi_127 10 23 0.0000000000908014
Eucalyptus grandis Chr06 4 CH_egr_263 11 31 0.0000000000141393
Lupinus albus Lalb_Chr23 4 CH_lal_69 9 11 0.000000000447183
Malus domestica Chr02 4 CH_mdo_452 10 67 0.0000951927
Medicago truncatula chr5 4 CH_mtr_182 7 8 0.000000000515698
Medicago truncatula chr3 4 CH_mtr_584 6 18 0.000149961
Nelumbo nucifera chr1 4 CH_nnu_332 6 21 0.00099865
Oryza sativa ssp. japonica chr07 4 CH_osa_365 5 8 0.00016757
Physcomitrium patens Chr02 4 CH_ppa_12 8 9 0.000000000272668
Salvia bowleyana GWHASIU00000002 4 CH_sbo_83 11 26 0.00000000000248618
Sapria himalayana scaffold46_4242896 4 CH_shi_129 4 5 0.0000279924
Sapria himalayana scaffold149_526024 4 CH_shi_33 8 23 0.000000000370667
Solanum lycopersicum SL4.0ch09 4 CH_sly_153 8 12 0.0000000281515
Solanum lycopersicum SL4.0ch04 4 CH_sly_34 12 12 2.38806e-18
Solanum pennellii Spenn-ch02 4 CH_spe_102 6 6 0.00000000526513
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_153 5 5 0.00000245712

Available child term results

Ontology identifier Description Number of clusters
GO:0000311 plastid large ribosomal subunit 4
GO:0000312 plastid small ribosomal subunit 10
GO:0000313 organellar ribosome 14
GO:0005761 mitochondrial ribosome 2
GO:0005762 mitochondrial large ribosomal subunit 8
GO:0005763 mitochondrial small ribosomal subunit 14
GO:0009547 plastid ribosome 76
GO:0015934 large ribosomal subunit 14
GO:0015935 small ribosomal subunit 18
GO:0022625 cytosolic large ribosomal subunit 6
GO:0022626 cytosolic ribosome 4
GO:0022627 cytosolic small ribosomal subunit 10
GO:0042788 polysomal ribosome 4
GO:0044391 ribosomal subunit 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001