Functional clusters
Information
- Type Gene Ontology
- Description ribosome
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr13 | 3 | CH_acertr_415 | 8 | 41 | 0.000299911 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 3 | CH_arhy_592 | 6 | 14 | 0.00033943 |
Brassica oleracea | C7 | 3 | CH_bol_219 | 5 | 5 | 0.000014291 |
Brassica rapa | Brapa_scaffold_58 | 3 | CH_bra_32 | 18 | 74 | 0.00000000000674449 |
Camellia sinensis var. sinensis | Chr12 | 3 | CH_camsi_127 | 10 | 23 | 0.0000000000908014 |
Eucalyptus grandis | Chr06 | 3 | CH_egr_263 | 11 | 31 | 0.0000000000141393 |
Lupinus albus | Lalb_Chr23 | 3 | CH_lal_69 | 9 | 11 | 0.000000000447183 |
Malus domestica | Chr02 | 3 | CH_mdo_452 | 10 | 67 | 0.0000951927 |
Medicago truncatula | chr5 | 3 | CH_mtr_182 | 7 | 8 | 0.000000000515698 |
Medicago truncatula | chr3 | 3 | CH_mtr_584 | 6 | 18 | 0.000149961 |
Nelumbo nucifera | chr1 | 3 | CH_nnu_332 | 6 | 21 | 0.00099865 |
Oryza sativa ssp. japonica | chr07 | 3 | CH_osa_365 | 5 | 8 | 0.00016757 |
Physcomitrium patens | Chr02 | 3 | CH_ppa_12 | 8 | 9 | 0.000000000272668 |
Salvia bowleyana | GWHASIU00000002 | 3 | CH_sbo_83 | 11 | 26 | 0.00000000000248618 |
Sapria himalayana | scaffold46_4242896 | 3 | CH_shi_129 | 4 | 5 | 0.0000279924 |
Sapria himalayana | scaffold149_526024 | 3 | CH_shi_33 | 8 | 23 | 0.000000000370667 |
Solanum lycopersicum | SL4.0ch09 | 3 | CH_sly_153 | 8 | 12 | 0.0000000281515 |
Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_34 | 12 | 12 | 2.38806e-18 |
Solanum pennellii | Spenn-ch02 | 3 | CH_spe_102 | 6 | 6 | 0.00000000526513 |
Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_153 | 5 | 5 | 0.00000245712 |
Acer truncatum | chr13 | 4 | CH_acertr_415 | 8 | 41 | 0.000299911 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 4 | CH_arhy_592 | 6 | 14 | 0.00033943 |
Brassica oleracea | C7 | 4 | CH_bol_219 | 5 | 5 | 0.000014291 |
Brassica rapa | Brapa_scaffold_58 | 4 | CH_bra_32 | 18 | 74 | 0.00000000000674449 |
Camellia sinensis var. sinensis | Chr12 | 4 | CH_camsi_127 | 10 | 23 | 0.0000000000908014 |
Eucalyptus grandis | Chr06 | 4 | CH_egr_263 | 11 | 31 | 0.0000000000141393 |
Lupinus albus | Lalb_Chr23 | 4 | CH_lal_69 | 9 | 11 | 0.000000000447183 |
Malus domestica | Chr02 | 4 | CH_mdo_452 | 10 | 67 | 0.0000951927 |
Medicago truncatula | chr5 | 4 | CH_mtr_182 | 7 | 8 | 0.000000000515698 |
Medicago truncatula | chr3 | 4 | CH_mtr_584 | 6 | 18 | 0.000149961 |
Nelumbo nucifera | chr1 | 4 | CH_nnu_332 | 6 | 21 | 0.00099865 |
Oryza sativa ssp. japonica | chr07 | 4 | CH_osa_365 | 5 | 8 | 0.00016757 |
Physcomitrium patens | Chr02 | 4 | CH_ppa_12 | 8 | 9 | 0.000000000272668 |
Salvia bowleyana | GWHASIU00000002 | 4 | CH_sbo_83 | 11 | 26 | 0.00000000000248618 |
Sapria himalayana | scaffold46_4242896 | 4 | CH_shi_129 | 4 | 5 | 0.0000279924 |
Sapria himalayana | scaffold149_526024 | 4 | CH_shi_33 | 8 | 23 | 0.000000000370667 |
Solanum lycopersicum | SL4.0ch09 | 4 | CH_sly_153 | 8 | 12 | 0.0000000281515 |
Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_34 | 12 | 12 | 2.38806e-18 |
Solanum pennellii | Spenn-ch02 | 4 | CH_spe_102 | 6 | 6 | 0.00000000526513 |
Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_153 | 5 | 5 | 0.00000245712 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000311 | plastid large ribosomal subunit | 4 |
GO:0000312 | plastid small ribosomal subunit | 10 |
GO:0000313 | organellar ribosome | 14 |
GO:0005761 | mitochondrial ribosome | 2 |
GO:0005762 | mitochondrial large ribosomal subunit | 8 |
GO:0005763 | mitochondrial small ribosomal subunit | 14 |
GO:0009547 | plastid ribosome | 76 |
GO:0015934 | large ribosomal subunit | 14 |
GO:0015935 | small ribosomal subunit | 18 |
GO:0022625 | cytosolic large ribosomal subunit | 6 |
GO:0022626 | cytosolic ribosome | 4 |
GO:0022627 | cytosolic small ribosomal subunit | 10 |
GO:0042788 | polysomal ribosome | 4 |
GO:0044391 | ribosomal subunit | 10 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |