Functional clusters

Information

  • Type Gene Ontology
  • Description plastid

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 3 CH_aly_304 8 10 0.000555078
Arabidopsis thaliana Chr5 3 CH_ath_129 29 74 0.0000000182257
Arabidopsis thaliana Chr5 3 CH_ath_195 23 55 0.000000671269
Arabidopsis thaliana Chr5 3 CH_ath_234 23 57 0.00000257004
Arabidopsis thaliana Chr5 3 CH_ath_261 27 79 0.00000501784
Arabidopsis thaliana Chr5 3 CH_ath_367 26 80 0.0000394456
Arabidopsis thaliana Chr5 3 CH_ath_483 23 69 0.00021914
Arabidopsis thaliana Chr5 3 CH_ath_571 23 72 0.00055582
Brassica carinata ChrB07 3 CH_bca_403 14 32 0.000006464
Brassica carinata ChrB07 3 CH_bca_474 8 9 0.0000223847
Brassica napus BNapus_Darmor_BZH_scaffold_253 3 CH_bna_26 23 37 9.47141e-17
Brassica napus C05 3 CH_bna_379 8 9 0.0000220025
Brassica oleracea Boleracea_scaffold_45 3 CH_bol_40 28 80 0.0000000000017575
Brassica rapa Brapa_scaffold_25 3 CH_bra_14 29 53 5.49454e-16
Brassica rapa A06 3 CH_bra_210 8 9 0.000155466
Brassica rapa Brapa_scaffold_151 3 CH_bra_59 16 25 0.00000000810987
Cardamine hirsuta Chr1 3 CH_chi_209 9 11 0.0000527467
Chenopodium quinoa C_Quinoa_Scaffold_4480 3 CH_cqu_552 11 18 0.000940695
Capsella rubella scaffold_1 3 CH_cru_347 8 10 0.000968152
Gossypium hirsutum A04 3 CH_ghi_560 7 7 0.000363773
Helianthus annuus HanXRQChr08 3 CH_han_233 12 15 0.0000000436205
Salvia bowleyana GWHASIU00000001 3 CH_sbo_18 29 35 2.48419e-28
Sechium edule Contig00347 3 CH_sed_109 13 17 0.000000867058
Sequoiadendron giganteum chr10 3 CH_sgi_925 7 7 0.0000484139
Solanum lycopersicum SL4.0ch00 3 CH_sly_109 13 14 0.000000000976076
Solanum lycopersicum SL4.0ch00 3 CH_sly_22 30 39 5.03348e-22
Solanum lycopersicum SL4.0ch00 3 CH_sly_75 14 14 0.00000000000556923
Solanum tuberosum ST4.03ch01 3 CH_stu_280 11 16 0.00000352493
Solanum tuberosum ST4.03ch12 3 CH_stu_339 22 79 0.000020968
Selenicereus undatus Scaffold_19921 3 CH_sun_15 18 23 0.00000000000214625
Zea mays 1 3 CH_zma_43 13 13 0.00000000015435
Arabidopsis lyrata scaffold_1 4 CH_aly_304 8 10 0.000555078
Arabidopsis thaliana Chr5 4 CH_ath_129 29 74 0.0000000182257
Arabidopsis thaliana Chr5 4 CH_ath_195 23 55 0.000000671269
Arabidopsis thaliana Chr5 4 CH_ath_234 23 57 0.00000257004
Arabidopsis thaliana Chr5 4 CH_ath_261 27 79 0.00000501784
Arabidopsis thaliana Chr5 4 CH_ath_367 26 80 0.0000394456
Arabidopsis thaliana Chr5 4 CH_ath_483 23 69 0.00021914
Arabidopsis thaliana Chr5 4 CH_ath_571 23 72 0.00055582
Brassica carinata ChrB07 4 CH_bca_403 14 32 0.000006464
Brassica carinata ChrB07 4 CH_bca_474 8 9 0.0000223847
Brassica napus BNapus_Darmor_BZH_scaffold_253 4 CH_bna_26 23 37 9.47141e-17
Brassica napus C05 4 CH_bna_379 8 9 0.0000220025
Brassica oleracea Boleracea_scaffold_45 4 CH_bol_40 28 80 0.0000000000017575
Brassica rapa Brapa_scaffold_25 4 CH_bra_14 29 53 5.49454e-16
Brassica rapa A06 4 CH_bra_210 8 9 0.000155466
Brassica rapa Brapa_scaffold_151 4 CH_bra_59 16 25 0.00000000810987
Cardamine hirsuta Chr1 4 CH_chi_209 9 11 0.0000527467
Chenopodium quinoa C_Quinoa_Scaffold_4480 4 CH_cqu_552 11 18 0.000940695
Capsella rubella scaffold_1 4 CH_cru_347 8 10 0.000968152
Gossypium hirsutum A04 4 CH_ghi_560 7 7 0.000363773
Helianthus annuus HanXRQChr08 4 CH_han_233 12 15 0.0000000436205
Salvia bowleyana GWHASIU00000001 4 CH_sbo_18 29 35 2.48419e-28
Sechium edule Contig00347 4 CH_sed_109 13 17 0.000000867058
Sequoiadendron giganteum chr10 4 CH_sgi_925 7 7 0.0000484139
Solanum lycopersicum SL4.0ch00 4 CH_sly_109 13 14 0.000000000976076
Solanum lycopersicum SL4.0ch00 4 CH_sly_22 30 39 5.03348e-22
Solanum lycopersicum SL4.0ch00 4 CH_sly_75 14 14 0.00000000000556923
Solanum tuberosum ST4.03ch01 4 CH_stu_280 11 16 0.00000352493
Solanum tuberosum ST4.03ch12 4 CH_stu_339 22 79 0.000020968
Selenicereus undatus Scaffold_19921 4 CH_sun_15 18 23 0.00000000000214625
Zea mays 1 4 CH_zma_43 13 13 0.00000000015435

Available child term results

Ontology identifier Description Number of clusters
GO:0000311 plastid large ribosomal subunit 4
GO:0000312 plastid small ribosomal subunit 10
GO:0000427 plastid-encoded plastid RNA polymerase complex 2
GO:0009501 amyloplast 8
GO:0009507 chloroplast 38
GO:0009508 plastid chromosome 2
GO:0009509 chromoplast 4
GO:0009515 granal stacked thylakoid 2
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009526 plastid envelope 4
GO:0009532 plastid stroma 2
GO:0009533 chloroplast stromal thylakoid 2
GO:0009534 chloroplast thylakoid 6
GO:0009535 chloroplast thylakoid membrane 46
GO:0009543 chloroplast thylakoid lumen 2
GO:0009547 plastid ribosome 76
GO:0009569 chloroplast starch grain 2
GO:0009570 chloroplast stroma 8
GO:0009571 proplastid stroma 4
GO:0009575 chromoplast stroma 4
GO:0009578 etioplast stroma 12
GO:0009706 chloroplast inner membrane 10
GO:0009707 chloroplast outer membrane 4
GO:0009941 chloroplast envelope 10
GO:0010006 Toc complex 2
GO:0010240 plastid pyruvate dehydrogenase complex 10
GO:0010287 plastoglobule 12
GO:0010319 stromule 2
GO:0010368 chloroplast isoamylase complex 2
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0031357 integral component of chloroplast inner membrane 12
GO:0031359 integral component of chloroplast outer membrane 2
GO:0031897 Tic complex 10
GO:0031972 chloroplast intermembrane space 4
GO:0031976 plastid thylakoid 2
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2
GO:0035452 extrinsic component of plastid membrane 4
GO:0042644 chloroplast nucleoid 4
GO:0061927 TOC-TIC supercomplex I 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001