Functional clusters
Information
- Type Gene Ontology
- Description plastid
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_304 | 8 | 10 | 0.000555078 |
Arabidopsis thaliana | Chr5 | 3 | CH_ath_129 | 29 | 74 | 0.0000000182257 |
Arabidopsis thaliana | Chr5 | 3 | CH_ath_195 | 23 | 55 | 0.000000671269 |
Arabidopsis thaliana | Chr5 | 3 | CH_ath_234 | 23 | 57 | 0.00000257004 |
Arabidopsis thaliana | Chr5 | 3 | CH_ath_261 | 27 | 79 | 0.00000501784 |
Arabidopsis thaliana | Chr5 | 3 | CH_ath_367 | 26 | 80 | 0.0000394456 |
Arabidopsis thaliana | Chr5 | 3 | CH_ath_483 | 23 | 69 | 0.00021914 |
Arabidopsis thaliana | Chr5 | 3 | CH_ath_571 | 23 | 72 | 0.00055582 |
Brassica carinata | ChrB07 | 3 | CH_bca_403 | 14 | 32 | 0.000006464 |
Brassica carinata | ChrB07 | 3 | CH_bca_474 | 8 | 9 | 0.0000223847 |
Brassica napus | BNapus_Darmor_BZH_scaffold_253 | 3 | CH_bna_26 | 23 | 37 | 9.47141e-17 |
Brassica napus | C05 | 3 | CH_bna_379 | 8 | 9 | 0.0000220025 |
Brassica oleracea | Boleracea_scaffold_45 | 3 | CH_bol_40 | 28 | 80 | 0.0000000000017575 |
Brassica rapa | Brapa_scaffold_25 | 3 | CH_bra_14 | 29 | 53 | 5.49454e-16 |
Brassica rapa | A06 | 3 | CH_bra_210 | 8 | 9 | 0.000155466 |
Brassica rapa | Brapa_scaffold_151 | 3 | CH_bra_59 | 16 | 25 | 0.00000000810987 |
Cardamine hirsuta | Chr1 | 3 | CH_chi_209 | 9 | 11 | 0.0000527467 |
Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 3 | CH_cqu_552 | 11 | 18 | 0.000940695 |
Capsella rubella | scaffold_1 | 3 | CH_cru_347 | 8 | 10 | 0.000968152 |
Gossypium hirsutum | A04 | 3 | CH_ghi_560 | 7 | 7 | 0.000363773 |
Helianthus annuus | HanXRQChr08 | 3 | CH_han_233 | 12 | 15 | 0.0000000436205 |
Salvia bowleyana | GWHASIU00000001 | 3 | CH_sbo_18 | 29 | 35 | 2.48419e-28 |
Sechium edule | Contig00347 | 3 | CH_sed_109 | 13 | 17 | 0.000000867058 |
Sequoiadendron giganteum | chr10 | 3 | CH_sgi_925 | 7 | 7 | 0.0000484139 |
Solanum lycopersicum | SL4.0ch00 | 3 | CH_sly_109 | 13 | 14 | 0.000000000976076 |
Solanum lycopersicum | SL4.0ch00 | 3 | CH_sly_22 | 30 | 39 | 5.03348e-22 |
Solanum lycopersicum | SL4.0ch00 | 3 | CH_sly_75 | 14 | 14 | 0.00000000000556923 |
Solanum tuberosum | ST4.03ch01 | 3 | CH_stu_280 | 11 | 16 | 0.00000352493 |
Solanum tuberosum | ST4.03ch12 | 3 | CH_stu_339 | 22 | 79 | 0.000020968 |
Selenicereus undatus | Scaffold_19921 | 3 | CH_sun_15 | 18 | 23 | 0.00000000000214625 |
Zea mays | 1 | 3 | CH_zma_43 | 13 | 13 | 0.00000000015435 |
Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_304 | 8 | 10 | 0.000555078 |
Arabidopsis thaliana | Chr5 | 4 | CH_ath_129 | 29 | 74 | 0.0000000182257 |
Arabidopsis thaliana | Chr5 | 4 | CH_ath_195 | 23 | 55 | 0.000000671269 |
Arabidopsis thaliana | Chr5 | 4 | CH_ath_234 | 23 | 57 | 0.00000257004 |
Arabidopsis thaliana | Chr5 | 4 | CH_ath_261 | 27 | 79 | 0.00000501784 |
Arabidopsis thaliana | Chr5 | 4 | CH_ath_367 | 26 | 80 | 0.0000394456 |
Arabidopsis thaliana | Chr5 | 4 | CH_ath_483 | 23 | 69 | 0.00021914 |
Arabidopsis thaliana | Chr5 | 4 | CH_ath_571 | 23 | 72 | 0.00055582 |
Brassica carinata | ChrB07 | 4 | CH_bca_403 | 14 | 32 | 0.000006464 |
Brassica carinata | ChrB07 | 4 | CH_bca_474 | 8 | 9 | 0.0000223847 |
Brassica napus | BNapus_Darmor_BZH_scaffold_253 | 4 | CH_bna_26 | 23 | 37 | 9.47141e-17 |
Brassica napus | C05 | 4 | CH_bna_379 | 8 | 9 | 0.0000220025 |
Brassica oleracea | Boleracea_scaffold_45 | 4 | CH_bol_40 | 28 | 80 | 0.0000000000017575 |
Brassica rapa | Brapa_scaffold_25 | 4 | CH_bra_14 | 29 | 53 | 5.49454e-16 |
Brassica rapa | A06 | 4 | CH_bra_210 | 8 | 9 | 0.000155466 |
Brassica rapa | Brapa_scaffold_151 | 4 | CH_bra_59 | 16 | 25 | 0.00000000810987 |
Cardamine hirsuta | Chr1 | 4 | CH_chi_209 | 9 | 11 | 0.0000527467 |
Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 4 | CH_cqu_552 | 11 | 18 | 0.000940695 |
Capsella rubella | scaffold_1 | 4 | CH_cru_347 | 8 | 10 | 0.000968152 |
Gossypium hirsutum | A04 | 4 | CH_ghi_560 | 7 | 7 | 0.000363773 |
Helianthus annuus | HanXRQChr08 | 4 | CH_han_233 | 12 | 15 | 0.0000000436205 |
Salvia bowleyana | GWHASIU00000001 | 4 | CH_sbo_18 | 29 | 35 | 2.48419e-28 |
Sechium edule | Contig00347 | 4 | CH_sed_109 | 13 | 17 | 0.000000867058 |
Sequoiadendron giganteum | chr10 | 4 | CH_sgi_925 | 7 | 7 | 0.0000484139 |
Solanum lycopersicum | SL4.0ch00 | 4 | CH_sly_109 | 13 | 14 | 0.000000000976076 |
Solanum lycopersicum | SL4.0ch00 | 4 | CH_sly_22 | 30 | 39 | 5.03348e-22 |
Solanum lycopersicum | SL4.0ch00 | 4 | CH_sly_75 | 14 | 14 | 0.00000000000556923 |
Solanum tuberosum | ST4.03ch01 | 4 | CH_stu_280 | 11 | 16 | 0.00000352493 |
Solanum tuberosum | ST4.03ch12 | 4 | CH_stu_339 | 22 | 79 | 0.000020968 |
Selenicereus undatus | Scaffold_19921 | 4 | CH_sun_15 | 18 | 23 | 0.00000000000214625 |
Zea mays | 1 | 4 | CH_zma_43 | 13 | 13 | 0.00000000015435 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000311 | plastid large ribosomal subunit | 4 |
GO:0000312 | plastid small ribosomal subunit | 10 |
GO:0000427 | plastid-encoded plastid RNA polymerase complex | 2 |
GO:0009501 | amyloplast | 8 |
GO:0009507 | chloroplast | 38 |
GO:0009508 | plastid chromosome | 2 |
GO:0009509 | chromoplast | 4 |
GO:0009515 | granal stacked thylakoid | 2 |
GO:0009517 | PSII associated light-harvesting complex II | 2 |
GO:0009526 | plastid envelope | 4 |
GO:0009532 | plastid stroma | 2 |
GO:0009533 | chloroplast stromal thylakoid | 2 |
GO:0009534 | chloroplast thylakoid | 6 |
GO:0009535 | chloroplast thylakoid membrane | 46 |
GO:0009543 | chloroplast thylakoid lumen | 2 |
GO:0009547 | plastid ribosome | 76 |
GO:0009569 | chloroplast starch grain | 2 |
GO:0009570 | chloroplast stroma | 8 |
GO:0009571 | proplastid stroma | 4 |
GO:0009575 | chromoplast stroma | 4 |
GO:0009578 | etioplast stroma | 12 |
GO:0009706 | chloroplast inner membrane | 10 |
GO:0009707 | chloroplast outer membrane | 4 |
GO:0009941 | chloroplast envelope | 10 |
GO:0010006 | Toc complex | 2 |
GO:0010240 | plastid pyruvate dehydrogenase complex | 10 |
GO:0010287 | plastoglobule | 12 |
GO:0010319 | stromule | 2 |
GO:0010368 | chloroplast isoamylase complex | 2 |
GO:0030093 | chloroplast photosystem I | 2 |
GO:0030095 | chloroplast photosystem II | 4 |
GO:0031357 | integral component of chloroplast inner membrane | 12 |
GO:0031359 | integral component of chloroplast outer membrane | 2 |
GO:0031897 | Tic complex | 10 |
GO:0031972 | chloroplast intermembrane space | 4 |
GO:0031976 | plastid thylakoid | 2 |
GO:0035451 | extrinsic component of stromal side of plastid thylakoid membrane | 2 |
GO:0035452 | extrinsic component of plastid membrane | 4 |
GO:0042644 | chloroplast nucleoid | 4 |
GO:0061927 | TOC-TIC supercomplex I | 2 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |