Functional clusters

Information

  • Type Gene Ontology
  • Description intracellular non-membrane-bounded organelle

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 3 CH_aly_126 7 7 0.00000179472
Capsella rubella scaffold_3 3 CH_cru_204 6 6 0.0000481685
Capsella rubella scaffold_8 3 CH_cru_316 8 16 0.00057854
Eutrema salsugineum scaffold_2 3 CH_esa_220 7 10 0.000308424
Malus domestica Chr09 3 CH_mdo_573 7 11 0.000301097
Quercus lobata 12 3 CH_qlo_699 10 24 0.0000496663
Schrenkiella parvula ch3-6 3 CH_spa_106 6 6 0.0000452912
Selenicereus undatus Scaffold_33675 3 CH_sun_65 7 8 0.00000754873
Arabidopsis lyrata scaffold_3 4 CH_aly_126 7 7 0.00000179472
Capsella rubella scaffold_3 4 CH_cru_204 6 6 0.0000481685
Capsella rubella scaffold_8 4 CH_cru_316 8 16 0.00057854
Eutrema salsugineum scaffold_2 4 CH_esa_220 7 10 0.000308424
Malus domestica Chr09 4 CH_mdo_573 7 11 0.000301097
Quercus lobata 12 4 CH_qlo_699 10 24 0.0000496663
Schrenkiella parvula ch3-6 4 CH_spa_106 6 6 0.0000452912
Selenicereus undatus Scaffold_33675 4 CH_sun_65 7 8 0.00000754873

Available child term results

Ontology identifier Description Number of clusters
GO:0000311 plastid large ribosomal subunit 4
GO:0000312 plastid small ribosomal subunit 10
GO:0000313 organellar ribosome 14
GO:0000775 chromosome, centromeric region 4
GO:0000776 kinetochore 2
GO:0000781 chromosome, telomeric region 4
GO:0000785 chromatin 4
GO:0000786 nucleosome 162
GO:0000792 heterochromatin 8
GO:0000795 synaptonemal complex 4
GO:0000796 condensin complex 36
GO:0000802 transverse filament 20
GO:0000808 origin recognition complex 8
GO:0000811 GINS complex 8
GO:0000812 Swr1 complex 4
GO:0000818 nuclear MIS12/MIND complex 2
GO:0000922 spindle pole 26
GO:0000923 equatorial microtubule organizing center 2
GO:0000931 gamma-tubulin large complex 4
GO:0000940 outer kinetochore 4
GO:0001534 radial spoke 4
GO:0005655 nucleolar ribonuclease P complex 30
GO:0005657 replication fork 2
GO:0005662 DNA replication factor A complex 4
GO:0005664 nuclear origin of replication recognition complex 16
GO:0005694 chromosome 4
GO:0005712 chiasma 4
GO:0005721 pericentric heterochromatin 16
GO:0005730 nucleolus 14
GO:0005736 RNA polymerase I complex 2
GO:0005761 mitochondrial ribosome 2
GO:0005762 mitochondrial large ribosomal subunit 8
GO:0005763 mitochondrial small ribosomal subunit 14
GO:0005811 lipid droplet 2
GO:0005813 centrosome 2
GO:0005815 microtubule organizing center 2
GO:0005819 spindle 2
GO:0005828 kinetochore microtubule 2
GO:0005840 ribosome 40
GO:0005874 microtubule 6
GO:0005876 spindle microtubule 2
GO:0005880 nuclear microtubule 6
GO:0005885 Arp2/3 protein complex 2
GO:0008278 cohesin complex 20
GO:0008290 F-actin capping protein complex 16
GO:0008352 katanin complex 2
GO:0008622 epsilon DNA polymerase complex 38
GO:0009508 plastid chromosome 2
GO:0009547 plastid ribosome 76
GO:0009574 preprophase band 2
GO:0010369 chromocenter 24
GO:0010370 perinucleolar chromocenter 4
GO:0010494 cytoplasmic stress granule 4
GO:0012511 monolayer-surrounded lipid storage body 48
GO:0015629 actin cytoskeleton 2
GO:0015934 large ribosomal subunit 14
GO:0015935 small ribosomal subunit 18
GO:0016459 myosin complex 22
GO:0016514 SWI/SNF complex 8
GO:0022625 cytosolic large ribosomal subunit 6
GO:0022626 cytosolic ribosome 4
GO:0022627 cytosolic small ribosomal subunit 10
GO:0030286 dynein complex 2
GO:0030875 rDNA protrusion 2
GO:0030896 checkpoint clamp complex 20
GO:0030915 Smc5-Smc6 complex 28
GO:0031011 Ino80 complex 18
GO:0031213 RSF complex 28
GO:0031262 Ndc80 complex 14
GO:0031390 Ctf18 RFC-like complex 18
GO:0031422 RecQ family helicase-topoisomerase III complex 14
GO:0031469 polyhedral organelle 2
GO:0034457 Mpp10 complex 24
GO:0035060 brahma complex 4
GO:0035101 FACT complex 74
GO:0035770 ribonucleoprotein granule 2
GO:0035861 site of double-strand break 4
GO:0042644 chloroplast nucleoid 4
GO:0042729 DASH complex 2
GO:0042788 polysomal ribosome 4
GO:0043601 nuclear replisome 2
GO:0043625 delta DNA polymerase complex 10
GO:0044391 ribosomal subunit 10
GO:0045298 tubulin complex 4
GO:0055028 cortical microtubule 2
GO:0070652 HAUS complex 18
GO:0072686 mitotic spindle 12
GO:0099513 polymeric cytoskeletal fiber 2
GO:1990718 axonemal central pair projection 6
GO:1990752 microtubule end 2
GO:1990879 CST complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001