Functional clusters

Information

  • Type Gene Ontology
  • Description photosynthetic membrane

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus BNapus_Darmor_BZH_scaffold_287 3 CH_bna_51 12 25 0.000000000000110603
Brassica oleracea C2 3 CH_bol_155 6 7 0.000000734747
Gossypium hirsutum A09 3 CH_ghi_343 8 20 0.00000668813
Helianthus annuus HanXRQChr04 3 CH_han_370 7 13 0.00000505639
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_279 5 5 0.0000123252
Medicago truncatula scaffold0002 3 CH_mtr_83 11 18 0.0000000000000506085
Populus trichocarpa Chr13 3 CH_ptr_27 21 44 1.90006e-22
Rosa chinensis RcHm_v2.0_CP 3 CH_rch_24 21 62 3.11754e-24
Salix brachista GWHAAZH00000021 3 CH_sbr_64 15 58 0.0000000000619233
Solanum lycopersicum SL4.0ch00 3 CH_sly_20 23 57 6.70447e-23
Selenicereus undatus Scaffold_13745 3 CH_sun_1 27 44 1.72047e-32
Selenicereus undatus Scaffold_33673 3 CH_sun_17 9 10 0.0000000000341344
Zea mays scaf_45 3 CH_zma_58 10 19 0.00000000130445
Brassica napus BNapus_Darmor_BZH_scaffold_287 4 CH_bna_51 12 25 0.000000000000110603
Brassica oleracea C2 4 CH_bol_155 6 7 0.000000734747
Gossypium hirsutum A09 4 CH_ghi_343 8 20 0.00000668813
Helianthus annuus HanXRQChr04 4 CH_han_370 7 13 0.00000505639
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_279 5 5 0.0000123252
Medicago truncatula scaffold0002 4 CH_mtr_83 11 18 0.0000000000000506085
Populus trichocarpa Chr13 4 CH_ptr_27 21 44 1.90006e-22
Rosa chinensis RcHm_v2.0_CP 4 CH_rch_24 21 62 3.11754e-24
Salix brachista GWHAAZH00000021 4 CH_sbr_64 15 58 0.0000000000619233
Solanum lycopersicum SL4.0ch00 4 CH_sly_20 23 57 6.70447e-23
Selenicereus undatus Scaffold_13745 4 CH_sun_1 27 44 1.72047e-32
Selenicereus undatus Scaffold_33673 4 CH_sun_17 9 10 0.0000000000341344
Zea mays scaf_45 4 CH_zma_58 10 19 0.00000000130445

Available child term results

Ontology identifier Description Number of clusters
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009521 photosystem 8
GO:0009522 photosystem I 8
GO:0009523 photosystem II 14
GO:0009535 chloroplast thylakoid membrane 46
GO:0009538 photosystem I reaction center 4
GO:0009539 photosystem II reaction center 16
GO:0009654 photosystem II oxygen evolving complex 8
GO:0009782 photosystem I antenna complex 2
GO:0009783 photosystem II antenna complex 6
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2
GO:0042651 thylakoid membrane 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001