Functional clusters
Information
- Type Gene Ontology
- Description photosynthetic membrane
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica napus | BNapus_Darmor_BZH_scaffold_287 | 3 | CH_bna_51 | 12 | 25 | 0.000000000000110603 |
Brassica oleracea | C2 | 3 | CH_bol_155 | 6 | 7 | 0.000000734747 |
Gossypium hirsutum | A09 | 3 | CH_ghi_343 | 8 | 20 | 0.00000668813 |
Helianthus annuus | HanXRQChr04 | 3 | CH_han_370 | 7 | 13 | 0.00000505639 |
Lactuca sativa | Lsat_1_v8_lg_1 | 3 | CH_lsa_279 | 5 | 5 | 0.0000123252 |
Medicago truncatula | scaffold0002 | 3 | CH_mtr_83 | 11 | 18 | 0.0000000000000506085 |
Populus trichocarpa | Chr13 | 3 | CH_ptr_27 | 21 | 44 | 1.90006e-22 |
Rosa chinensis | RcHm_v2.0_CP | 3 | CH_rch_24 | 21 | 62 | 3.11754e-24 |
Salix brachista | GWHAAZH00000021 | 3 | CH_sbr_64 | 15 | 58 | 0.0000000000619233 |
Solanum lycopersicum | SL4.0ch00 | 3 | CH_sly_20 | 23 | 57 | 6.70447e-23 |
Selenicereus undatus | Scaffold_13745 | 3 | CH_sun_1 | 27 | 44 | 1.72047e-32 |
Selenicereus undatus | Scaffold_33673 | 3 | CH_sun_17 | 9 | 10 | 0.0000000000341344 |
Zea mays | scaf_45 | 3 | CH_zma_58 | 10 | 19 | 0.00000000130445 |
Brassica napus | BNapus_Darmor_BZH_scaffold_287 | 4 | CH_bna_51 | 12 | 25 | 0.000000000000110603 |
Brassica oleracea | C2 | 4 | CH_bol_155 | 6 | 7 | 0.000000734747 |
Gossypium hirsutum | A09 | 4 | CH_ghi_343 | 8 | 20 | 0.00000668813 |
Helianthus annuus | HanXRQChr04 | 4 | CH_han_370 | 7 | 13 | 0.00000505639 |
Lactuca sativa | Lsat_1_v8_lg_1 | 4 | CH_lsa_279 | 5 | 5 | 0.0000123252 |
Medicago truncatula | scaffold0002 | 4 | CH_mtr_83 | 11 | 18 | 0.0000000000000506085 |
Populus trichocarpa | Chr13 | 4 | CH_ptr_27 | 21 | 44 | 1.90006e-22 |
Rosa chinensis | RcHm_v2.0_CP | 4 | CH_rch_24 | 21 | 62 | 3.11754e-24 |
Salix brachista | GWHAAZH00000021 | 4 | CH_sbr_64 | 15 | 58 | 0.0000000000619233 |
Solanum lycopersicum | SL4.0ch00 | 4 | CH_sly_20 | 23 | 57 | 6.70447e-23 |
Selenicereus undatus | Scaffold_13745 | 4 | CH_sun_1 | 27 | 44 | 1.72047e-32 |
Selenicereus undatus | Scaffold_33673 | 4 | CH_sun_17 | 9 | 10 | 0.0000000000341344 |
Zea mays | scaf_45 | 4 | CH_zma_58 | 10 | 19 | 0.00000000130445 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0009517 | PSII associated light-harvesting complex II | 2 |
GO:0009521 | photosystem | 8 |
GO:0009522 | photosystem I | 8 |
GO:0009523 | photosystem II | 14 |
GO:0009535 | chloroplast thylakoid membrane | 46 |
GO:0009538 | photosystem I reaction center | 4 |
GO:0009539 | photosystem II reaction center | 16 |
GO:0009654 | photosystem II oxygen evolving complex | 8 |
GO:0009782 | photosystem I antenna complex | 2 |
GO:0009783 | photosystem II antenna complex | 6 |
GO:0030093 | chloroplast photosystem I | 2 |
GO:0030095 | chloroplast photosystem II | 4 |
GO:0035451 | extrinsic component of stromal side of plastid thylakoid membrane | 2 |
GO:0042651 | thylakoid membrane | 2 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |