Functional clusters

Information

  • Type Gene Ontology
  • Description nucleoplasm

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Punica granatum NC_045134.1 3 CH_pgr_372 4 5 0.000678208
Punica granatum NC_045134.1 4 CH_pgr_372 4 5 0.000678208

Available child term results

Ontology identifier Description Number of clusters
GO:0000118 histone deacetylase complex 4
GO:0000123 histone acetyltransferase complex 2
GO:0000124 SAGA complex 10
GO:0000811 GINS complex 8
GO:0000812 Swr1 complex 4
GO:0005656 nuclear pre-replicative complex 2
GO:0005665 RNA polymerase II, core complex 2
GO:0005669 transcription factor TFIID complex 28
GO:0005672 transcription factor TFIIA complex 8
GO:0005673 transcription factor TFIIE complex 8
GO:0005674 transcription factor TFIIF complex 10
GO:0015030 Cajal body 2
GO:0016591 RNA polymerase II, holoenzyme 2
GO:0016593 Cdc73/Paf1 complex 6
GO:0016604 nuclear body 6
GO:0016607 nuclear speck 8
GO:0032777 Piccolo NuA4 histone acetyltransferase complex 24
GO:0032783 super elongation complex 6
GO:0035061 interchromatin granule 6
GO:0035098 ESC/E(Z) complex 2
GO:0035101 FACT complex 74
GO:0035267 NuA4 histone acetyltransferase complex 14
GO:0046695 SLIK (SAGA-like) complex 8
GO:0048188 Set1C/COMPASS complex 6
GO:0070449 elongin complex 16
GO:0070461 SAGA-type complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001