Functional clusters

Information

  • Type Gene Ontology
  • Description nuclear protein-containing complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr3 3 CH_camsi_565 11 73 0.000101307
Chara braunii BFEA01000298 3 CH_cbr_185 7 18 0.000877331
Helianthus annuus HanXRQChr06 3 CH_han_395 6 10 0.0000127291
Camellia sinensis var. sinensis Chr3 4 CH_camsi_565 11 73 0.000101307
Chara braunii BFEA01000298 4 CH_cbr_185 7 18 0.000877331
Helianthus annuus HanXRQChr06 4 CH_han_395 6 10 0.0000127291

Available child term results

Ontology identifier Description Number of clusters
GO:0000112 nucleotide-excision repair factor 3 complex 2
GO:0000118 histone deacetylase complex 4
GO:0000123 histone acetyltransferase complex 2
GO:0000124 SAGA complex 10
GO:0000176 nuclear exosome (RNase complex) 2
GO:0000347 THO complex 8
GO:0000418 RNA polymerase IV complex 8
GO:0000419 RNA polymerase V complex 6
GO:0000439 transcription factor TFIIH core complex 12
GO:0000445 THO complex part of transcription export complex 2
GO:0000811 GINS complex 8
GO:0000812 Swr1 complex 4
GO:0000818 nuclear MIS12/MIND complex 2
GO:0005643 nuclear pore 32
GO:0005655 nucleolar ribonuclease P complex 30
GO:0005656 nuclear pre-replicative complex 2
GO:0005662 DNA replication factor A complex 4
GO:0005664 nuclear origin of replication recognition complex 16
GO:0005665 RNA polymerase II, core complex 2
GO:0005666 RNA polymerase III complex 14
GO:0005669 transcription factor TFIID complex 28
GO:0005672 transcription factor TFIIA complex 8
GO:0005673 transcription factor TFIIE complex 8
GO:0005674 transcription factor TFIIF complex 10
GO:0005677 chromatin silencing complex 8
GO:0005680 anaphase-promoting complex 22
GO:0005681 spliceosomal complex 42
GO:0005682 U5 snRNP 4
GO:0005685 U1 snRNP 4
GO:0005688 U6 snRNP 2
GO:0005689 U12-type spliceosomal complex 14
GO:0005736 RNA polymerase I complex 2
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex 24
GO:0005848 mRNA cleavage stimulating factor complex 16
GO:0005849 mRNA cleavage factor complex 8
GO:0008622 epsilon DNA polymerase complex 38
GO:0016514 SWI/SNF complex 8
GO:0016591 RNA polymerase II, holoenzyme 2
GO:0016592 mediator complex 24
GO:0016593 Cdc73/Paf1 complex 6
GO:0016602 CCAAT-binding factor complex 42
GO:0030896 checkpoint clamp complex 20
GO:0031011 Ino80 complex 18
GO:0031080 nuclear pore outer ring 2
GO:0031213 RSF complex 28
GO:0031380 nuclear RNA-directed RNA polymerase complex 2
GO:0031519 PcG protein complex 8
GO:0032039 integrator complex 44
GO:0032777 Piccolo NuA4 histone acetyltransferase complex 24
GO:0032783 super elongation complex 6
GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex 10
GO:0033597 mitotic checkpoint complex 8
GO:0034457 Mpp10 complex 24
GO:0034693 U11/U12 snRNP 6
GO:0035060 brahma complex 4
GO:0035098 ESC/E(Z) complex 2
GO:0035101 FACT complex 74
GO:0035102 PRC1 complex 14
GO:0035145 exon-exon junction complex 8
GO:0035267 NuA4 histone acetyltransferase complex 14
GO:0042729 DASH complex 2
GO:0043240 Fanconi anaemia nuclear complex 8
GO:0043564 Ku70:Ku80 complex 16
GO:0043601 nuclear replisome 2
GO:0043625 delta DNA polymerase complex 10
GO:0044611 nuclear pore inner ring 4
GO:0046540 U4/U6 x U5 tri-snRNP complex 14
GO:0046695 SLIK (SAGA-like) complex 8
GO:0048188 Set1C/COMPASS complex 6
GO:0055029 nuclear DNA-directed RNA polymerase complex 2
GO:0070449 elongin complex 16
GO:0070461 SAGA-type complex 2
GO:0070531 BRCA1-A complex 16
GO:0071006 U2-type catalytic step 1 spliceosome 2
GO:0071013 catalytic step 2 spliceosome 10
GO:0071821 FANCM-MHF complex 6
GO:0089701 U2AF complex 36
GO:1990879 CST complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001