Functional clusters
Information
- Type Gene Ontology
- Description large ribosomal subunit
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00013 | 3 | CH_atr_107 | 5 | 21 | 0.00000030136 |
| Cicer arietinum L. | Ca_LG8_v3 | 3 | CH_car_100 | 3 | 3 | 0.0000706032 |
| Lotus japonicus | Contig00564 | 3 | CH_lja_243 | 3 | 3 | 0.000101586 |
| Magnolia biondii | Chr11 | 3 | CH_mbi_107 | 6 | 18 | 0.000000000260326 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_208 | 3 | 3 | 0.0000403267 |
| Rhododendron simsii | chr03 | 3 | CH_rsi_164 | 5 | 15 | 0.0000000165134 |
| Salvia bowleyana | GWHASIU00000005 | 3 | CH_sbo_67 | 6 | 7 | 0.0000000000000412842 |
| Amborella trichopoda | AmTr_v1.0_scaffold00013 | 4 | CH_atr_107 | 5 | 21 | 0.00000030136 |
| Cicer arietinum L. | Ca_LG8_v3 | 4 | CH_car_100 | 3 | 3 | 0.0000706032 |
| Lotus japonicus | Contig00564 | 4 | CH_lja_243 | 3 | 3 | 0.000101586 |
| Magnolia biondii | Chr11 | 4 | CH_mbi_107 | 6 | 18 | 0.000000000260326 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_208 | 3 | 3 | 0.0000403267 |
| Rhododendron simsii | chr03 | 4 | CH_rsi_164 | 5 | 15 | 0.0000000165134 |
| Salvia bowleyana | GWHASIU00000005 | 4 | CH_sbo_67 | 6 | 7 | 0.0000000000000412842 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000311 | plastid large ribosomal subunit | 4 |
| GO:0005762 | mitochondrial large ribosomal subunit | 8 |
| GO:0022625 | cytosolic large ribosomal subunit | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |