Functional clusters

Information

  • Type Gene Ontology
  • Description perinuclear region of cytoplasm

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 3 CH_ath_459 3 6 0.000160989
Brassica carinata ChrC05 3 CH_bca_170 4 5 0.0000000198838
Brassica napus A05 3 CH_bna_127 4 4 0.00000000313086
Brassica napus C05 3 CH_bna_151 4 5 0.0000000156493
Brassica oleracea C5 3 CH_bol_79 4 5 0.00000000662473
Brassica rapa A05 3 CH_bra_122 3 3 0.00000367707
Chenopodium quinoa C_Quinoa_Scaffold_2876 3 CH_cqu_11 12 17 4.31607e-29
Chenopodium quinoa C_Quinoa_Scaffold_3792 3 CH_cqu_40 7 10 0.00000000000000287947
Eutrema salsugineum scaffold_5 3 CH_esa_143 3 5 0.0000395482
Medicago truncatula chr4 3 CH_mtr_580 3 5 0.000138022
Physcomitrium patens Chr01 3 CH_ppa_26 5 13 0.00000008888
Populus trichocarpa Chr10 3 CH_ptr_228 4 9 0.000000773782
Simmondsia chinensis GWHAASQ00000020 3 CH_sci_124 4 20 0.0000211892
Solanum tuberosum ST4.03ch06 3 CH_stu_314 4 17 0.0000101532
Tarenaya hassleriana NW_010963717.1 3 CH_tha_78 3 3 0.00000973316
Arabidopsis thaliana Chr5 4 CH_ath_459 3 6 0.000160989
Brassica carinata ChrC05 4 CH_bca_170 4 5 0.0000000198838
Brassica napus A05 4 CH_bna_127 4 4 0.00000000313086
Brassica napus C05 4 CH_bna_151 4 5 0.0000000156493
Brassica oleracea C5 4 CH_bol_79 4 5 0.00000000662473
Brassica rapa A05 4 CH_bra_122 3 3 0.00000367707
Chenopodium quinoa C_Quinoa_Scaffold_2876 4 CH_cqu_11 12 17 4.31607e-29
Chenopodium quinoa C_Quinoa_Scaffold_3792 4 CH_cqu_40 7 10 0.00000000000000287947
Eutrema salsugineum scaffold_5 4 CH_esa_143 3 5 0.0000395482
Medicago truncatula chr4 4 CH_mtr_580 3 5 0.000138022
Physcomitrium patens Chr01 4 CH_ppa_26 5 13 0.00000008888
Populus trichocarpa Chr10 4 CH_ptr_228 4 9 0.000000773782
Simmondsia chinensis GWHAASQ00000020 4 CH_sci_124 4 20 0.0000211892
Solanum tuberosum ST4.03ch06 4 CH_stu_314 4 17 0.0000101532
Tarenaya hassleriana NW_010963717.1 4 CH_tha_78 3 3 0.00000973316

Available child term results

Ontology identifier Description Number of clusters
GO:1990578 perinuclear endoplasmic reticulum membrane 46

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001