Functional clusters
Information
- Type Gene Ontology
- Description perinuclear region of cytoplasm
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_459 | 3 | 6 | 0.000160989 |
| Brassica carinata | ChrC05 | 3 | CH_bca_170 | 4 | 5 | 0.0000000198838 |
| Brassica napus | A05 | 3 | CH_bna_127 | 4 | 4 | 0.00000000313086 |
| Brassica napus | C05 | 3 | CH_bna_151 | 4 | 5 | 0.0000000156493 |
| Brassica oleracea | C5 | 3 | CH_bol_79 | 4 | 5 | 0.00000000662473 |
| Brassica rapa | A05 | 3 | CH_bra_122 | 3 | 3 | 0.00000367707 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2876 | 3 | CH_cqu_11 | 12 | 17 | 4.31607e-29 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3792 | 3 | CH_cqu_40 | 7 | 10 | 0.00000000000000287947 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_143 | 3 | 5 | 0.0000395482 |
| Medicago truncatula | chr4 | 3 | CH_mtr_580 | 3 | 5 | 0.000138022 |
| Physcomitrium patens | Chr01 | 3 | CH_ppa_26 | 5 | 13 | 0.00000008888 |
| Populus trichocarpa | Chr10 | 3 | CH_ptr_228 | 4 | 9 | 0.000000773782 |
| Simmondsia chinensis | GWHAASQ00000020 | 3 | CH_sci_124 | 4 | 20 | 0.0000211892 |
| Solanum tuberosum | ST4.03ch06 | 3 | CH_stu_314 | 4 | 17 | 0.0000101532 |
| Tarenaya hassleriana | NW_010963717.1 | 3 | CH_tha_78 | 3 | 3 | 0.00000973316 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_459 | 3 | 6 | 0.000160989 |
| Brassica carinata | ChrC05 | 4 | CH_bca_170 | 4 | 5 | 0.0000000198838 |
| Brassica napus | A05 | 4 | CH_bna_127 | 4 | 4 | 0.00000000313086 |
| Brassica napus | C05 | 4 | CH_bna_151 | 4 | 5 | 0.0000000156493 |
| Brassica oleracea | C5 | 4 | CH_bol_79 | 4 | 5 | 0.00000000662473 |
| Brassica rapa | A05 | 4 | CH_bra_122 | 3 | 3 | 0.00000367707 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2876 | 4 | CH_cqu_11 | 12 | 17 | 4.31607e-29 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3792 | 4 | CH_cqu_40 | 7 | 10 | 0.00000000000000287947 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_143 | 3 | 5 | 0.0000395482 |
| Medicago truncatula | chr4 | 4 | CH_mtr_580 | 3 | 5 | 0.000138022 |
| Physcomitrium patens | Chr01 | 4 | CH_ppa_26 | 5 | 13 | 0.00000008888 |
| Populus trichocarpa | Chr10 | 4 | CH_ptr_228 | 4 | 9 | 0.000000773782 |
| Simmondsia chinensis | GWHAASQ00000020 | 4 | CH_sci_124 | 4 | 20 | 0.0000211892 |
| Solanum tuberosum | ST4.03ch06 | 4 | CH_stu_314 | 4 | 17 | 0.0000101532 |
| Tarenaya hassleriana | NW_010963717.1 | 4 | CH_tha_78 | 3 | 3 | 0.00000973316 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1990578 | perinuclear endoplasmic reticulum membrane | 46 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |