Functional clusters
Information
- Type Gene Ontology
- Description mitochondrial matrix
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_4 | 3 | CH_aly_49 | 5 | 6 | 0.000000000277083 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_340 | 4 | 6 | 0.00000124028 |
| Brassica carinata | ChrC01 | 3 | CH_bca_381 | 5 | 35 | 0.00000381457 |
| Brassica carinata | ChrB01 | 3 | CH_bca_862 | 3 | 6 | 0.000570303 |
| Brassica napus | C03 | 3 | CH_bna_193 | 6 | 43 | 0.000000171348 |
| Brassica napus | A03 | 3 | CH_bna_333 | 5 | 34 | 0.0000100884 |
| Brassica oleracea | C3 | 3 | CH_bol_98 | 6 | 37 | 0.0000000344544 |
| Brassica rapa | A03 | 3 | CH_bra_178 | 5 | 31 | 0.0000629698 |
| Erythranthe guttata | scaffold_10 | 3 | CH_egut_38 | 7 | 8 | 5.04954e-16 |
| Papaver somniferum | NC_039364.1 | 3 | CH_pso_386 | 4 | 9 | 0.0000125699 |
| Papaver somniferum | NW_020650859.1 | 3 | CH_pso_605 | 3 | 4 | 0.000394894 |
| Papaver somniferum | NC_039366.1 | 3 | CH_pso_91 | 6 | 7 | 0.000000000000696306 |
| Quercus lobata | 8 | 3 | CH_qlo_789 | 3 | 3 | 0.000123375 |
| Rhododendron simsii | chr02 | 3 | CH_rsi_432 | 3 | 5 | 0.000253261 |
| Zea mays | 3 | 3 | CH_zma_364 | 3 | 3 | 0.00096829 |
| Arabidopsis lyrata | scaffold_4 | 4 | CH_aly_49 | 5 | 6 | 0.000000000277083 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_340 | 4 | 6 | 0.00000124028 |
| Brassica carinata | ChrC01 | 4 | CH_bca_381 | 5 | 35 | 0.00000381457 |
| Brassica carinata | ChrB01 | 4 | CH_bca_862 | 3 | 6 | 0.000570303 |
| Brassica napus | C03 | 4 | CH_bna_193 | 6 | 43 | 0.000000171348 |
| Brassica napus | A03 | 4 | CH_bna_333 | 5 | 34 | 0.0000100884 |
| Brassica oleracea | C3 | 4 | CH_bol_98 | 6 | 37 | 0.0000000344544 |
| Brassica rapa | A03 | 4 | CH_bra_178 | 5 | 31 | 0.0000629698 |
| Erythranthe guttata | scaffold_10 | 4 | CH_egut_38 | 7 | 8 | 5.04954e-16 |
| Papaver somniferum | NC_039364.1 | 4 | CH_pso_386 | 4 | 9 | 0.0000125699 |
| Papaver somniferum | NW_020650859.1 | 4 | CH_pso_605 | 3 | 4 | 0.000394894 |
| Papaver somniferum | NC_039366.1 | 4 | CH_pso_91 | 6 | 7 | 0.000000000000696306 |
| Quercus lobata | 8 | 4 | CH_qlo_789 | 3 | 3 | 0.000123375 |
| Rhododendron simsii | chr02 | 4 | CH_rsi_432 | 3 | 5 | 0.000253261 |
| Zea mays | 3 | 4 | CH_zma_364 | 3 | 3 | 0.00096829 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0005761 | mitochondrial ribosome | 2 |
| GO:0005762 | mitochondrial large ribosomal subunit | 8 |
| GO:0005763 | mitochondrial small ribosomal subunit | 14 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |