Functional clusters

Information

  • Type Gene Ontology
  • Description cytoplasm

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 3 CH_aag_185 17 24 0.000903271
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 3 CH_amhyb_177 16 20 0.000471888
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 3 CH_arhy_626 30 58 0.000465474
Arabidopsis thaliana Chr1 3 CH_ath_258 30 44 0.00000492638
Arabidopsis thaliana Chr5 3 CH_ath_283 28 40 0.00000807432
Arabidopsis thaliana Chr3 3 CH_ath_377 28 42 0.000047586
Arabidopsis thaliana Chr3 3 CH_ath_435 28 43 0.000107678
Arabidopsis thaliana Chr1 3 CH_ath_475 26 39 0.000194693
Arabidopsis thaliana Chr3 3 CH_ath_493 17 20 0.000251623
Arabidopsis thaliana Chr1 3 CH_ath_540 29 48 0.000347985
Arabidopsis thaliana Chr3 3 CH_ath_595 15 18 0.000789617
Arabidopsis thaliana Chr5 3 CH_ath_613 30 51 0.000933445
Arabidopsis thaliana Chr2 3 CH_ath_617 16 19 0.000977774
Cannabis sativa NC_044379.1 3 CH_cansat_244 11 11 0.000118202
Coffea canephora chr5 3 CH_ccan_186 12 81 0.0000215852
Eucalyptus grandis Chr09 3 CH_egr_633 19 25 0.00002585
Eucalyptus grandis Chr05 3 CH_egr_868 27 50 0.000783149
Helianthus annuus HanXRQChr03 3 CH_han_571 18 26 0.000216001
Magnolia biondii Chr04 3 CH_mbi_429 30 69 0.0000629982
Phaseolus vulgaris Chr08 3 CH_pvu_308 28 46 0.000337756
Sequoiadendron giganteum chr10 3 CH_sgi_1251 30 69 0.000404485
Sapria himalayana scaffold9_16683904 3 CH_shi_181 9 13 0.000115998
Solanum lycopersicum SL4.0ch12 3 CH_sly_454 29 43 0.000187734
Solanum pennellii Spenn-ch12 3 CH_spe_145 30 58 0.00000018945
Solanum tuberosum ST4.03ch06 3 CH_stu_319 17 19 0.0000124226
Vigna mungo CM024070.1 3 CH_vmu_119 27 43 0.00000223418
Anthoceros agrestis Sc2ySwM_340 4 CH_aag_185 17 24 0.000903271
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 4 CH_amhyb_177 16 20 0.000471888
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 4 CH_arhy_626 30 58 0.000465474
Arabidopsis thaliana Chr1 4 CH_ath_258 30 44 0.00000492638
Arabidopsis thaliana Chr5 4 CH_ath_283 28 40 0.00000807432
Arabidopsis thaliana Chr3 4 CH_ath_377 28 42 0.000047586
Arabidopsis thaliana Chr3 4 CH_ath_435 28 43 0.000107678
Arabidopsis thaliana Chr1 4 CH_ath_475 26 39 0.000194693
Arabidopsis thaliana Chr3 4 CH_ath_493 17 20 0.000251623
Arabidopsis thaliana Chr1 4 CH_ath_540 29 48 0.000347985
Arabidopsis thaliana Chr3 4 CH_ath_595 15 18 0.000789617
Arabidopsis thaliana Chr5 4 CH_ath_613 30 51 0.000933445
Arabidopsis thaliana Chr2 4 CH_ath_617 16 19 0.000977774
Cannabis sativa NC_044379.1 4 CH_cansat_244 11 11 0.000118202
Coffea canephora chr5 4 CH_ccan_186 12 81 0.0000215852
Eucalyptus grandis Chr09 4 CH_egr_633 19 25 0.00002585
Eucalyptus grandis Chr05 4 CH_egr_868 27 50 0.000783149
Helianthus annuus HanXRQChr03 4 CH_han_571 18 26 0.000216001
Magnolia biondii Chr04 4 CH_mbi_429 30 69 0.0000629982
Phaseolus vulgaris Chr08 4 CH_pvu_308 28 46 0.000337756
Sequoiadendron giganteum chr10 4 CH_sgi_1251 30 69 0.000404485
Sapria himalayana scaffold9_16683904 4 CH_shi_181 9 13 0.000115998
Solanum lycopersicum SL4.0ch12 4 CH_sly_454 29 43 0.000187734
Solanum pennellii Spenn-ch12 4 CH_spe_145 30 58 0.00000018945
Solanum tuberosum ST4.03ch06 4 CH_stu_319 17 19 0.0000124226
Vigna mungo CM024070.1 4 CH_vmu_119 27 43 0.00000223418

Available child term results

Ontology identifier Description Number of clusters
GO:0000139 Golgi membrane 10
GO:0000145 exocyst 110
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 34
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 20
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 22
GO:0000306 extrinsic component of vacuolar membrane 4
GO:0000311 plastid large ribosomal subunit 4
GO:0000312 plastid small ribosomal subunit 10
GO:0000326 protein storage vacuole 22
GO:0000327 lytic vacuole within protein storage vacuole 12
GO:0000407 phagophore assembly site 2
GO:0000421 autophagosome membrane 4
GO:0000427 plastid-encoded plastid RNA polymerase complex 2
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 10
GO:0000813 ESCRT I complex 2
GO:0000814 ESCRT II complex 20
GO:0000938 GARP complex 30
GO:0001534 radial spoke 4
GO:0005739 mitochondrion 40
GO:0005740 mitochondrial envelope 2
GO:0005741 mitochondrial outer membrane 2
GO:0005742 mitochondrial outer membrane translocase complex 8
GO:0005743 mitochondrial inner membrane 16
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 12
GO:0005747 mitochondrial respiratory chain complex I 6
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 2
GO:0005750 mitochondrial respiratory chain complex III 2
GO:0005753 mitochondrial proton-transporting ATP synthase complex 2
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core 6
GO:0005758 mitochondrial intermembrane space 2
GO:0005759 mitochondrial matrix 30
GO:0005761 mitochondrial ribosome 2
GO:0005762 mitochondrial large ribosomal subunit 8
GO:0005763 mitochondrial small ribosomal subunit 14
GO:0005764 lysosome 4
GO:0005768 endosome 2
GO:0005769 early endosome 4
GO:0005773 vacuole 16
GO:0005774 vacuolar membrane 14
GO:0005775 vacuolar lumen 8
GO:0005777 peroxisome 80
GO:0005779 integral component of peroxisomal membrane 2
GO:0005782 peroxisomal matrix 4
GO:0005783 endoplasmic reticulum 20
GO:0005784 Sec61 translocon complex 8
GO:0005785 signal recognition particle receptor complex 12
GO:0005787 signal peptidase complex 18
GO:0005789 endoplasmic reticulum membrane 14
GO:0005794 Golgi apparatus 6
GO:0005795 Golgi stack 2
GO:0005796 Golgi lumen 2
GO:0005797 Golgi medial cisterna 2
GO:0005801 cis-Golgi network 10
GO:0005802 trans-Golgi network 12
GO:0005829 cytosol 42
GO:0005852 eukaryotic translation initiation factor 3 complex 14
GO:0005854 nascent polypeptide-associated complex 34
GO:0005960 glycine cleavage complex 10
GO:0008250 oligosaccharyltransferase complex 6
GO:0009317 acetyl-CoA carboxylase complex 8
GO:0009329 acetate CoA-transferase complex 6
GO:0009501 amyloplast 8
GO:0009507 chloroplast 38
GO:0009508 plastid chromosome 2
GO:0009509 chromoplast 4
GO:0009511 plasmodesmatal endoplasmic reticulum 6
GO:0009515 granal stacked thylakoid 2
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009524 phragmoplast 8
GO:0009526 plastid envelope 4
GO:0009532 plastid stroma 2
GO:0009533 chloroplast stromal thylakoid 2
GO:0009534 chloroplast thylakoid 6
GO:0009535 chloroplast thylakoid membrane 46
GO:0009536 plastid 62
GO:0009543 chloroplast thylakoid lumen 2
GO:0009547 plastid ribosome 76
GO:0009569 chloroplast starch grain 2
GO:0009570 chloroplast stroma 8
GO:0009571 proplastid stroma 4
GO:0009574 preprophase band 2
GO:0009575 chromoplast stroma 4
GO:0009578 etioplast stroma 12
GO:0009706 chloroplast inner membrane 10
GO:0009707 chloroplast outer membrane 4
GO:0009923 fatty acid elongase complex 6
GO:0009941 chloroplast envelope 10
GO:0010006 Toc complex 2
GO:0010008 endosome membrane 10
GO:0010240 plastid pyruvate dehydrogenase complex 10
GO:0010282 senescence-associated vacuole 42
GO:0010287 plastoglobule 12
GO:0010319 stromule 2
GO:0010368 chloroplast isoamylase complex 2
GO:0010494 cytoplasmic stress granule 4
GO:0016281 eukaryotic translation initiation factor 4F complex 2
GO:0016471 vacuolar proton-transporting V-type ATPase complex 4
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0017119 Golgi transport complex 14
GO:0018444 translation release factor complex 12
GO:0022625 cytosolic large ribosomal subunit 6
GO:0022626 cytosolic ribosome 4
GO:0022627 cytosolic small ribosomal subunit 10
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0030117 membrane coat 18
GO:0030121 AP-1 adaptor complex 4
GO:0030122 AP-2 adaptor complex 6
GO:0030123 AP-3 adaptor complex 16
GO:0030126 COPI vesicle coat 8
GO:0030127 COPII vesicle coat 16
GO:0030132 clathrin coat of coated pit 8
GO:0030134 COPII-coated ER to Golgi transport vesicle 10
GO:0030176 integral component of endoplasmic reticulum membrane 6
GO:0031083 BLOC-1 complex 10
GO:0031201 SNARE complex 6
GO:0031303 integral component of endosome membrane 4
GO:0031304 intrinsic component of mitochondrial inner membrane 2
GO:0031307 integral component of mitochondrial outer membrane 6
GO:0031313 extrinsic component of endosome membrane 6
GO:0031314 extrinsic component of mitochondrial inner membrane 52
GO:0031357 integral component of chloroplast inner membrane 12
GO:0031359 integral component of chloroplast outer membrane 2
GO:0031415 NatA complex 8
GO:0031417 NatC complex 6
GO:0031597 cytosolic proteasome complex 10
GO:0031897 Tic complex 10
GO:0031966 mitochondrial membrane 4
GO:0031972 chloroplast intermembrane space 4
GO:0031976 plastid thylakoid 2
GO:0032541 cortical endoplasmic reticulum 2
GO:0032578 aleurone grain membrane 2
GO:0032585 multivesicular body membrane 2
GO:0032586 protein storage vacuole membrane 2
GO:0032588 trans-Golgi network membrane 2
GO:0032592 integral component of mitochondrial membrane 4
GO:0033095 aleurone grain 2
GO:0033263 CORVET complex 4
GO:0034066 Ric1-Rgp1 guanyl-nucleotide exchange factor complex 18
GO:0034245 mitochondrial DNA-directed RNA polymerase complex 2
GO:0034663 endoplasmic reticulum chaperone complex 2
GO:0034998 oligosaccharyltransferase I complex 2
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2
GO:0035452 extrinsic component of plastid membrane 4
GO:0035658 Mon1-Ccz1 complex 12
GO:0042406 extrinsic component of endoplasmic reticulum membrane 2
GO:0042644 chloroplast nucleoid 4
GO:0042720 mitochondrial inner membrane peptidase complex 8
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 20
GO:0042735 protein body 44
GO:0042765 GPI-anchor transamidase complex 4
GO:0042807 central vacuole 8
GO:0045025 mitochondrial degradosome 2
GO:0045252 oxoglutarate dehydrogenase complex 2
GO:0045334 clathrin-coated endocytic vesicle 2
GO:0048471 perinuclear region of cytoplasm 30
GO:0048500 signal recognition particle 10
GO:0055028 cortical microtubule 2
GO:0055087 Ski complex 6
GO:0061908 phagophore 12
GO:0061927 TOC-TIC supercomplex I 2
GO:0070382 exocytic vesicle 2
GO:0070772 PAS complex 16
GO:0070939 Dsl1/NZR complex 2
GO:0071203 WASH complex 6
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane 4
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e 2
GO:0071818 BAT3 complex 2
GO:0072546 EMC complex 20
GO:0080085 signal recognition particle, chloroplast targeting 4
GO:0090730 Las1 complex 16
GO:0097361 CIA complex 4
GO:0098791 Golgi apparatus subcompartment 2
GO:0098798 mitochondrial protein-containing complex 64
GO:0098800 inner mitochondrial membrane protein complex 4
GO:0098827 endoplasmic reticulum subcompartment 2
GO:0099738 cell cortex region 2
GO:1990071 TRAPPII protein complex 16
GO:1990316 Atg1/ULK1 kinase complex 10
GO:1990457 pexophagosome 8
GO:1990578 perinuclear endoplasmic reticulum membrane 46
GO:1990718 axonemal central pair projection 6
GO:1990745 EARP complex 26

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001