Functional clusters

Information

  • Type Gene Ontology
  • Description binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr3 3 CH_ath_358 30 47 0.0000318817
Arabidopsis thaliana Chr2 3 CH_ath_526 30 49 0.000295977
Arabidopsis thaliana Chr3 3 CH_ath_545 29 47 0.000415013
Arabidopsis thaliana Chr1 3 CH_ath_572 30 50 0.000582776
Arabidopsis thaliana Chr3 3 CH_ath_590 25 38 0.000696485
Coffea canephora chr6 3 CH_ccan_244 11 33 0.000112084
Coffea canephora chr5 3 CH_ccan_268 15 74 0.000132529
Coffea canephora chr5 3 CH_ccan_312 14 65 0.000267073
Coffea canephora chr1 3 CH_ccan_324 15 79 0.00035442
Lonicera japonica GWHAAZE00000005 3 CH_lonja_478 21 21 0.000292444
Magnolia biondii Chr17 3 CH_mbi_688 29 37 0.000999154
Salvia bowleyana GWHASIU00000004 3 CH_sbo_108 28 29 0.000000000161664
Salvia bowleyana GWHASIU00000002 3 CH_sbo_205 28 33 0.000000389038
Salvia bowleyana GWHASIU00000007 3 CH_sbo_228 27 32 0.00000121053
Salvia bowleyana GWHASIU00000007 3 CH_sbo_385 30 42 0.000158244
Salvia bowleyana GWHASIU00000008 3 CH_sbo_386 30 42 0.000158244
Selaginella moellendorffii scaffold_73 3 CH_smo_182 23 24 0.000655698
Selenicereus undatus Scaffold_2055 3 CH_sun_180 26 32 0.000432771
Arabidopsis thaliana Chr3 4 CH_ath_358 30 47 0.0000318817
Arabidopsis thaliana Chr2 4 CH_ath_526 30 49 0.000295977
Arabidopsis thaliana Chr3 4 CH_ath_545 29 47 0.000415013
Arabidopsis thaliana Chr1 4 CH_ath_572 30 50 0.000582776
Arabidopsis thaliana Chr3 4 CH_ath_590 25 38 0.000696485
Coffea canephora chr6 4 CH_ccan_244 11 33 0.000112084
Coffea canephora chr5 4 CH_ccan_268 15 74 0.000132529
Coffea canephora chr5 4 CH_ccan_312 14 65 0.000267073
Coffea canephora chr1 4 CH_ccan_324 15 79 0.00035442
Lonicera japonica GWHAAZE00000005 4 CH_lonja_478 21 21 0.000292444
Magnolia biondii Chr17 4 CH_mbi_688 29 37 0.000999154
Salvia bowleyana GWHASIU00000004 4 CH_sbo_108 28 29 0.000000000161664
Salvia bowleyana GWHASIU00000002 4 CH_sbo_205 28 33 0.000000389038
Salvia bowleyana GWHASIU00000007 4 CH_sbo_228 27 32 0.00000121053
Salvia bowleyana GWHASIU00000007 4 CH_sbo_385 30 42 0.000158244
Salvia bowleyana GWHASIU00000008 4 CH_sbo_386 30 42 0.000158244
Selaginella moellendorffii scaffold_73 4 CH_smo_182 23 24 0.000655698
Selenicereus undatus Scaffold_2055 4 CH_sun_180 26 32 0.000432771

Available child term results

Ontology identifier Description Number of clusters
GO:0000035 acyl binding 2
GO:0000036 acyl carrier activity 6
GO:0000049 tRNA binding 6
GO:0000062 fatty-acyl-CoA binding 4
GO:0000287 magnesium ion binding 8
GO:0000339 RNA cap binding 6
GO:0000400 four-way junction DNA binding 10
GO:0000774 adenyl-nucleotide exchange factor activity 10
GO:0000822 inositol hexakisphosphate binding 2
GO:0000976 transcription cis-regulatory region binding 6
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 44
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 12
GO:0000987 cis-regulatory region sequence-specific DNA binding 20
GO:0000993 RNA polymerase II complex binding 4
GO:0001093 TFIIB-class transcription factor binding 2
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding 4
GO:0001530 lipopolysaccharide binding 2
GO:0001664 G protein-coupled receptor binding 4
GO:0001786 phosphatidylserine binding 4
GO:0001872 (1->3)-beta-D-glucan binding 4
GO:0002020 protease binding 8
GO:0002151 G-quadruplex RNA binding 10
GO:0003676 nucleic acid binding 36
GO:0003677 DNA binding 164
GO:0003680 minor groove of adenine-thymine-rich DNA binding 70
GO:0003682 chromatin binding 2
GO:0003684 damaged DNA binding 8
GO:0003688 DNA replication origin binding 4
GO:0003690 double-stranded DNA binding 196
GO:0003691 double-stranded telomeric DNA binding 14
GO:0003697 single-stranded DNA binding 20
GO:0003723 RNA binding 10
GO:0003725 double-stranded RNA binding 12
GO:0003729 mRNA binding 16
GO:0003730 mRNA 3'-UTR binding 10
GO:0003743 translation initiation factor activity 4
GO:0003746 translation elongation factor activity 62
GO:0003747 translation release factor activity 10
GO:0003779 actin binding 10
GO:0003785 actin monomer binding 2
GO:0005047 signal recognition particle binding 10
GO:0005048 signal sequence binding 2
GO:0005053 peroxisome matrix targeting signal-2 binding 6
GO:0005179 hormone activity 6
GO:0005496 steroid binding 2
GO:0005504 fatty acid binding 62
GO:0005506 iron ion binding 142
GO:0005507 copper ion binding 154
GO:0005509 calcium ion binding 176
GO:0005515 protein binding 250
GO:0005516 calmodulin binding 74
GO:0005524 ATP binding 56
GO:0005525 GTP binding 14
GO:0005534 galactose binding 16
GO:0005536 glucose binding 16
GO:0005542 folic acid binding 88
GO:0005543 phospholipid binding 10
GO:0005544 calcium-dependent phospholipid binding 186
GO:0005545 1-phosphatidylinositol binding 2
GO:0008017 microtubule binding 6
GO:0008022 protein C-terminus binding 8
GO:0008061 chitin binding 178
GO:0008083 growth factor activity 6
GO:0008092 cytoskeletal protein binding 6
GO:0008097 5S rRNA binding 8
GO:0008134 transcription factor binding 6
GO:0008139 nuclear localization sequence binding 6
GO:0008143 poly(A) binding 6
GO:0008198 ferrous iron binding 34
GO:0008199 ferric iron binding 12
GO:0008270 zinc ion binding 74
GO:0008289 lipid binding 18
GO:0008301 DNA binding, bending 4
GO:0008312 7S RNA binding 2
GO:0008429 phosphatidylethanolamine binding 12
GO:0008430 selenium binding 32
GO:0008494 translation activator activity 4
GO:0009940 amino-terminal vacuolar sorting propeptide binding 8
GO:0010013 N-1-naphthylphthalamic acid binding 28
GO:0010181 FMN binding 84
GO:0010331 gibberellin binding 4
GO:0010385 double-stranded methylated DNA binding 2
GO:0010427 abscisic acid binding 174
GO:0016151 nickel cation binding 12
GO:0016168 chlorophyll binding 22
GO:0016208 AMP binding 2
GO:0017022 myosin binding 6
GO:0017025 TBP-class protein binding 18
GO:0017046 peptide hormone binding 14
GO:0017069 snRNA binding 2
GO:0017070 U6 snRNA binding 2
GO:0017076 purine nucleotide binding 6
GO:0017151 DEAD/H-box RNA helicase binding 6
GO:0019001 guanyl nucleotide binding 10
GO:0019003 GDP binding 4
GO:0019237 centromeric DNA binding 8
GO:0019825 oxygen binding 34
GO:0019842 vitamin binding 2
GO:0019843 rRNA binding 8
GO:0019863 IgE binding 40
GO:0019865 immunoglobulin binding 16
GO:0019894 kinesin binding 14
GO:0019899 enzyme binding 4
GO:0019900 kinase binding 2
GO:0019901 protein kinase binding 6
GO:0019902 phosphatase binding 2
GO:0019903 protein phosphatase binding 4
GO:0019904 protein domain specific binding 38
GO:0019905 syntaxin binding 10
GO:0020037 heme binding 108
GO:0030145 manganese ion binding 476
GO:0030151 molybdenum ion binding 8
GO:0030170 pyridoxal phosphate binding 44
GO:0030246 carbohydrate binding 508
GO:0030247 polysaccharide binding 690
GO:0030332 cyclin binding 2
GO:0030515 snoRNA binding 2
GO:0030533 triplet codon-amino acid adaptor activity 12
GO:0030544 Hsp70 protein binding 6
GO:0030620 U2 snRNA binding 6
GO:0030628 pre-mRNA 3'-splice site binding 26
GO:0030941 chloroplast targeting sequence binding 16
GO:0030942 endoplasmic reticulum signal peptide binding 10
GO:0030943 mitochondrion targeting sequence binding 6
GO:0030955 potassium ion binding 18
GO:0030957 Tat protein binding 2
GO:0030976 thiamine pyrophosphate binding 42
GO:0030983 mismatched DNA binding 46
GO:0031072 heat shock protein binding 2
GO:0031177 phosphopantetheine binding 12
GO:0031210 phosphatidylcholine binding 4
GO:0031267 small GTPase binding 14
GO:0031369 translation initiation factor binding 20
GO:0031418 L-ascorbic acid binding 32
GO:0031419 cobalamin binding 2
GO:0031490 chromatin DNA binding 80
GO:0031492 nucleosomal DNA binding 2
GO:0031493 nucleosomal histone binding 4
GO:0031593 polyubiquitin modification-dependent protein binding 4
GO:0031624 ubiquitin conjugating enzyme binding 10
GO:0031625 ubiquitin protein ligase binding 78
GO:0032051 clathrin light chain binding 10
GO:0032142 single guanine insertion binding 2
GO:0032422 purine-rich negative regulatory element binding 12
GO:0032549 ribonucleoside binding 56
GO:0032553 ribonucleotide binding 52
GO:0032555 purine ribonucleotide binding 14
GO:0032794 GTPase activating protein binding 2
GO:0032934 sterol binding 6
GO:0033218 amide binding 2
GO:0033612 receptor serine/threonine kinase binding 6
GO:0034336 misfolded RNA binding 4
GO:0034511 U3 snoRNA binding 22
GO:0035197 siRNA binding 10
GO:0035198 miRNA binding 4
GO:0035925 mRNA 3'-UTR AU-rich region binding 2
GO:0036002 pre-mRNA binding 2
GO:0036033 mediator complex binding 4
GO:0036094 small molecule binding 18
GO:0036310 annealing activity 2
GO:0036313 phosphatidylinositol 3-kinase catalytic subunit binding 6
GO:0042134 rRNA primary transcript binding 12
GO:0042277 peptide binding 2
GO:0042301 phosphate ion binding 4
GO:0042393 histone binding 16
GO:0042562 hormone binding 2
GO:0042802 identical protein binding 2
GO:0042803 protein homodimerization activity 2
GO:0042826 histone deacetylase binding 2
GO:0042834 peptidoglycan binding 4
GO:0043014 alpha-tubulin binding 18
GO:0043015 gamma-tubulin binding 6
GO:0043021 ribonucleoprotein complex binding 2
GO:0043023 ribosomal large subunit binding 22
GO:0043024 ribosomal small subunit binding 10
GO:0043047 single-stranded telomeric DNA binding 8
GO:0043130 ubiquitin binding 2
GO:0043167 ion binding 76
GO:0043168 anion binding 24
GO:0043169 cation binding 2
GO:0043175 RNA polymerase core enzyme binding 6
GO:0043177 organic acid binding 2
GO:0043295 glutathione binding 22
GO:0043394 proteoglycan binding 10
GO:0043424 protein histidine kinase binding 24
GO:0043531 ADP binding 1320
GO:0043546 molybdopterin cofactor binding 4
GO:0043565 sequence-specific DNA binding 36
GO:0043621 protein self-association 14
GO:0044877 protein-containing complex binding 4
GO:0045159 myosin II binding 2
GO:0045505 dynein intermediate chain binding 2
GO:0046790 virion binding 2
GO:0046870 cadmium ion binding 26
GO:0046872 metal ion binding 66
GO:0046906 tetrapyrrole binding 12
GO:0046914 transition metal ion binding 72
GO:0046923 ER retention sequence binding 4
GO:0046982 protein heterodimerization activity 110
GO:0046983 protein dimerization activity 80
GO:0048027 mRNA 5'-UTR binding 6
GO:0048038 quinone binding 22
GO:0048039 ubiquinone binding 6
GO:0050660 flavin adenine dinucleotide binding 316
GO:0050661 NADP binding 8
GO:0050897 cobalt ion binding 2
GO:0051011 microtubule minus-end binding 10
GO:0051015 actin filament binding 46
GO:0051019 mitogen-activated protein kinase binding 2
GO:0051082 unfolded protein binding 62
GO:0051087 chaperone binding 12
GO:0051287 NAD binding 38
GO:0051428 peptide hormone receptor binding 26
GO:0051536 iron-sulfur cluster binding 18
GO:0051537 2 iron, 2 sulfur cluster binding 24
GO:0051538 3 iron, 4 sulfur cluster binding 2
GO:0051539 4 iron, 4 sulfur cluster binding 6
GO:0051738 xanthophyll binding 2
GO:0051740 ethylene binding 2
GO:0051787 misfolded protein binding 4
GO:0051879 Hsp90 protein binding 2
GO:0061628 H3K27me3 modified histone binding 20
GO:0070026 nitric oxide binding 8
GO:0070063 RNA polymerase binding 2
GO:0070064 proline-rich region binding 6
GO:0070182 DNA polymerase binding 6
GO:0070273 phosphatidylinositol-4-phosphate binding 2
GO:0070300 phosphatidic acid binding 2
GO:0070401 NADP+ binding 18
GO:0070402 NADPH binding 2
GO:0070403 NAD+ binding 12
GO:0070406 glutamine binding 2
GO:0070577 lysine-acetylated histone binding 20
GO:0070628 proteasome binding 14
GO:0070696 transmembrane receptor protein serine/threonine kinase binding 4
GO:0070840 dynein complex binding 2
GO:0070878 primary miRNA binding 2
GO:0070888 E-box binding 38
GO:0071074 eukaryotic initiation factor eIF2 binding 4
GO:0071949 FAD binding 174
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding 2
GO:0080084 5S rDNA binding 8
GO:0090411 brassinosteroid binding 36
GO:0097100 supercoiled DNA binding 8
GO:0097177 mitochondrial ribosome binding 4
GO:0097367 carbohydrate derivative binding 14
GO:0097602 cullin family protein binding 24
GO:0140496 gamma-tubulin complex binding 2
GO:1901149 salicylic acid binding 6
GO:1901265 nucleoside phosphate binding 24
GO:1901363 heterocyclic compound binding 34
GO:1901612 cardiolipin binding 8
GO:1901681 sulfur compound binding 2
GO:1905538 polysome binding 2
GO:1905761 SCF ubiquitin ligase complex binding 16
GO:1990188 euchromatin binding 6
GO:1990247 N6-methyladenosine-containing RNA binding 2
GO:1990446 U1 snRNP binding 2
GO:1990825 sequence-specific mRNA binding 4
GO:1990837 sequence-specific double-stranded DNA binding 2
GO:1990841 promoter-specific chromatin binding 2
GO:2001070 starch binding 8
GO:2001071 maltoheptaose binding 4
GO:2001227 quercitrin binding 22

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001