Functional clusters

Information

  • Type Gene Ontology
  • Description carbohydrate derivative binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_99 24 41 0.0000000000827089
Rhododendron simsii chr01 3 CH_rsi_317 14 25 0.0000225531
Salvia bowleyana GWHASIU00000006 3 CH_sbo_281 22 76 0.0000143027
Solanum lycopersicum SL4.0ch07 3 CH_sly_520 9 11 0.000485059
Solanum pennellii Spenn-ch07 3 CH_spe_372 9 14 0.000257854
Trifolium pratense Tp57577_TGAC_v2_LG4 3 CH_tpr_251 12 19 0.000149085
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_265 21 53 0.000156889
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_99 24 41 0.0000000000827089
Rhododendron simsii chr01 4 CH_rsi_317 14 25 0.0000225531
Salvia bowleyana GWHASIU00000006 4 CH_sbo_281 22 76 0.0000143027
Solanum lycopersicum SL4.0ch07 4 CH_sly_520 9 11 0.000485059
Solanum pennellii Spenn-ch07 4 CH_spe_372 9 14 0.000257854
Trifolium pratense Tp57577_TGAC_v2_LG4 4 CH_tpr_251 12 19 0.000149085
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_265 21 53 0.000156889

Available child term results

Ontology identifier Description Number of clusters
GO:0000062 fatty-acyl-CoA binding 4
GO:0001530 lipopolysaccharide binding 2
GO:0005524 ATP binding 56
GO:0005525 GTP binding 14
GO:0008061 chitin binding 178
GO:0010181 FMN binding 84
GO:0016208 AMP binding 2
GO:0019003 GDP binding 4
GO:0032549 ribonucleoside binding 56
GO:0032553 ribonucleotide binding 52
GO:0032555 purine ribonucleotide binding 14
GO:0042834 peptidoglycan binding 4
GO:0043394 proteoglycan binding 10
GO:0043531 ADP binding 1320
GO:2001227 quercitrin binding 22

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001