Functional clusters

Information

  • Type Gene Ontology
  • Description protein heterodimerization activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 3 CH_aar_150 4 5 0.0000900773
Actinidia chinensis Lachesis_group9 3 CH_ach_246 4 7 0.000614025
Arabidopsis lyrata scaffold_8 3 CH_aly_155 7 32 0.00000875153
Arabidopsis lyrata scaffold_8 3 CH_aly_272 4 6 0.000329042
Arabidopsis thaliana Chr5 3 CH_ath_324 7 74 0.0000185857
Capsicum annuum PGAv.1.6.scaffold111 3 CH_can_103 6 6 0.000000000886044
Capsicum annuum PGAv.1.6.scaffold65 3 CH_can_392 5 14 0.000300254
Capsicum annuum PGAv.1.6.scaffold352 3 CH_can_407 4 6 0.000408136
Corylus avellana 4 3 CH_cav_434 4 8 0.000963385
Cardamine hirsuta Chr8 3 CH_chi_304 7 54 0.000237245
Citrullus lanatus CG_Chr02 3 CH_cla_121 4 6 0.000200727
Cucumis melo chr11 3 CH_cme_76 6 9 0.0000000121758
Chlamydomonas reinhardtii chromosome_6 3 CH_cre_2 25 66 7.25226e-32
Chlamydomonas reinhardtii chromosome_6 3 CH_cre_3 24 79 1.06427e-27
Chlamydomonas reinhardtii chromosome_12 3 CH_cre_4 17 40 1.30818e-21
Chlamydomonas reinhardtii chromosome_17 3 CH_cre_6 14 66 0.00000000000246178
Chlamydomonas reinhardtii chromosome_17 3 CH_cre_7 14 74 0.00000000001377
Capsella rubella scaffold_8 3 CH_cru_288 7 55 0.000339609
Cucumis sativus L. chr6 3 CH_csa_79 7 15 0.000000013985
Daucus carota DCARv2_Chr2 3 CH_dca_39 9 17 0.00000000000266803
Durio zibethinus NW_019167882.1 3 CH_dzi_295 4 6 0.000422111
Erigeron canadensis Conyza_canadensis_scaffold:3 3 CH_eca_446 5 23 0.000679305
Fragaria x ananassa Fvb3-4 3 CH_fan_107 8 28 0.00000000972209
Fragaria x ananassa Fvb3-3 3 CH_fan_18 11 25 6.56941e-16
Fragaria x ananassa Fvb3-1 3 CH_fan_349 7 47 0.0000512147
Fragaria x ananassa Fvb3-2 3 CH_fan_89 8 23 0.00000000155852
Fragaria vesca Fvb3 3 CH_fve_38 11 39 0.0000000000000732814
Gossypium hirsutum A08 3 CH_ghi_267 8 33 0.000000629826
Gossypium hirsutum D08 3 CH_ghi_371 7 30 0.0000175691
Glycine max Gm11 3 CH_gma_293 4 4 0.0000405325
Gossypium raimondii Chr04 3 CH_gra_133 8 33 0.000000346631
Hydrangea macrophylla Hma1.2p1_0035F.1 3 CH_hma_228 4 8 0.000309488
Lactuca sativa Lsat_1_v8_lg_5 3 CH_lsa_200 5 5 0.000000246047
Lactuca sativa Lsat_1_v8_lg_8 3 CH_lsa_241 8 39 0.00000234298
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_472 4 6 0.000640898
Micromonas commoda Chr_05 3 CH_mco_2 6 6 0.0000000000483345
Medicago truncatula chr5 3 CH_mtr_516 5 12 0.0000631654
Nicotiana tabacum Nitab4.5_0000610 3 CH_nta_80 5 16 0.0000846313
Oryza sativa ssp. japonica chr05 3 CH_osa_301 7 48 0.0000552925
Physcomitrium patens Chr06 3 CH_ppa_110 4 5 0.000095034
Papaver somniferum NC_039365.1 3 CH_pso_123 11 55 0.0000000000685589
Papaver somniferum NC_039367.1 3 CH_pso_216 9 44 0.0000000241914
Papaver somniferum NC_039361.1 3 CH_pso_239 9 49 0.0000000687948
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_94 12 62 0.0000000000000461781
Rhododendron simsii chr13 3 CH_rsi_185 6 10 0.0000000532952
Rhododendron simsii chr01 3 CH_rsi_443 5 17 0.000344916
Sechium edule LG01 3 CH_sed_255 4 6 0.000493913
Sechium edule LG05 3 CH_sed_62 6 7 0.00000000768504
Sequoiadendron giganteum chr4 3 CH_sgi_777 5 8 0.00000320124
Solanum pennellii Spenn-ch06 3 CH_spe_388 5 16 0.00027518
Solanum pennellii Spenn-ch03 3 CH_spe_66 11 62 0.000000000144446
Solanum tuberosum ST4.03ch06 3 CH_stu_628 5 19 0.000781032
Trifolium pratense Tp57577_TGAC_v2_LG6 3 CH_tpr_153 5 8 0.00000949785
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_188 5 12 0.0000457945
Zea mays 10 3 CH_zma_115 5 5 0.000000408936
Aethionema arabicum LG-5 4 CH_aar_150 4 5 0.0000900773
Actinidia chinensis Lachesis_group9 4 CH_ach_246 4 7 0.000614025
Arabidopsis lyrata scaffold_8 4 CH_aly_155 7 32 0.00000875153
Arabidopsis lyrata scaffold_8 4 CH_aly_272 4 6 0.000329042
Arabidopsis thaliana Chr5 4 CH_ath_324 7 74 0.0000185857
Capsicum annuum PGAv.1.6.scaffold111 4 CH_can_103 6 6 0.000000000886044
Capsicum annuum PGAv.1.6.scaffold65 4 CH_can_392 5 14 0.000300254
Capsicum annuum PGAv.1.6.scaffold352 4 CH_can_407 4 6 0.000408136
Corylus avellana 4 4 CH_cav_434 4 8 0.000963385
Cardamine hirsuta Chr8 4 CH_chi_304 7 54 0.000237245
Citrullus lanatus CG_Chr02 4 CH_cla_121 4 6 0.000200727
Cucumis melo chr11 4 CH_cme_76 6 9 0.0000000121758
Chlamydomonas reinhardtii chromosome_6 4 CH_cre_2 25 66 7.25226e-32
Chlamydomonas reinhardtii chromosome_6 4 CH_cre_3 24 79 1.06427e-27
Chlamydomonas reinhardtii chromosome_12 4 CH_cre_4 17 40 1.30818e-21
Chlamydomonas reinhardtii chromosome_17 4 CH_cre_6 14 66 0.00000000000246178
Chlamydomonas reinhardtii chromosome_17 4 CH_cre_7 14 74 0.00000000001377
Capsella rubella scaffold_8 4 CH_cru_288 7 55 0.000339609
Cucumis sativus L. chr6 4 CH_csa_79 7 15 0.000000013985
Daucus carota DCARv2_Chr2 4 CH_dca_39 9 17 0.00000000000266803
Durio zibethinus NW_019167882.1 4 CH_dzi_295 4 6 0.000422111
Erigeron canadensis Conyza_canadensis_scaffold:3 4 CH_eca_446 5 23 0.000679305
Fragaria x ananassa Fvb3-4 4 CH_fan_107 8 28 0.00000000972209
Fragaria x ananassa Fvb3-3 4 CH_fan_18 11 25 6.56941e-16
Fragaria x ananassa Fvb3-1 4 CH_fan_349 7 47 0.0000512147
Fragaria x ananassa Fvb3-2 4 CH_fan_89 8 23 0.00000000155852
Fragaria vesca Fvb3 4 CH_fve_38 11 39 0.0000000000000732814
Gossypium hirsutum A08 4 CH_ghi_267 8 33 0.000000629826
Gossypium hirsutum D08 4 CH_ghi_371 7 30 0.0000175691
Glycine max Gm11 4 CH_gma_293 4 4 0.0000405325
Gossypium raimondii Chr04 4 CH_gra_133 8 33 0.000000346631
Hydrangea macrophylla Hma1.2p1_0035F.1 4 CH_hma_228 4 8 0.000309488
Lactuca sativa Lsat_1_v8_lg_5 4 CH_lsa_200 5 5 0.000000246047
Lactuca sativa Lsat_1_v8_lg_8 4 CH_lsa_241 8 39 0.00000234298
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_472 4 6 0.000640898
Micromonas commoda Chr_05 4 CH_mco_2 6 6 0.0000000000483345
Medicago truncatula chr5 4 CH_mtr_516 5 12 0.0000631654
Nicotiana tabacum Nitab4.5_0000610 4 CH_nta_80 5 16 0.0000846313
Oryza sativa ssp. japonica chr05 4 CH_osa_301 7 48 0.0000552925
Physcomitrium patens Chr06 4 CH_ppa_110 4 5 0.000095034
Papaver somniferum NC_039365.1 4 CH_pso_123 11 55 0.0000000000685589
Papaver somniferum NC_039367.1 4 CH_pso_216 9 44 0.0000000241914
Papaver somniferum NC_039361.1 4 CH_pso_239 9 49 0.0000000687948
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_94 12 62 0.0000000000000461781
Rhododendron simsii chr13 4 CH_rsi_185 6 10 0.0000000532952
Rhododendron simsii chr01 4 CH_rsi_443 5 17 0.000344916
Sechium edule LG01 4 CH_sed_255 4 6 0.000493913
Sechium edule LG05 4 CH_sed_62 6 7 0.00000000768504
Sequoiadendron giganteum chr4 4 CH_sgi_777 5 8 0.00000320124
Solanum pennellii Spenn-ch06 4 CH_spe_388 5 16 0.00027518
Solanum pennellii Spenn-ch03 4 CH_spe_66 11 62 0.000000000144446
Solanum tuberosum ST4.03ch06 4 CH_stu_628 5 19 0.000781032
Trifolium pratense Tp57577_TGAC_v2_LG6 4 CH_tpr_153 5 8 0.00000949785
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_188 5 12 0.0000457945
Zea mays 10 4 CH_zma_115 5 5 0.000000408936

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001