Functional clusters

Information

  • Type Gene Ontology
  • Description cis-regulatory region sequence-specific DNA binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus C09 3 CH_bna_588 5 40 0.000432519
Brassica oleracea C9 3 CH_bol_114 7 52 0.0000000984688
Brassica rapa A01 3 CH_bra_242 3 3 0.000282941
Corylus avellana 10 3 CH_cav_285 4 14 0.000122295
Glycine max Gm18 3 CH_gma_128 5 7 0.0000000199243
Lupinus albus Lalb_Chr20 3 CH_lal_4 14 15 2.90844e-31
Lupinus albus Lalb_Chr15 3 CH_lal_95 5 6 0.0000000313325
Medicago truncatula chr3 3 CH_mtr_651 4 16 0.000342664
Punica granatum NC_045133.1 3 CH_pgr_153 7 58 0.000000392245
Trochodendron aralioides group4 3 CH_tar_477 4 13 0.000759363
Brassica napus C09 4 CH_bna_588 5 40 0.000432519
Brassica oleracea C9 4 CH_bol_114 7 52 0.0000000984688
Brassica rapa A01 4 CH_bra_242 3 3 0.000282941
Corylus avellana 10 4 CH_cav_285 4 14 0.000122295
Glycine max Gm18 4 CH_gma_128 5 7 0.0000000199243
Lupinus albus Lalb_Chr20 4 CH_lal_4 14 15 2.90844e-31
Lupinus albus Lalb_Chr15 4 CH_lal_95 5 6 0.0000000313325
Medicago truncatula chr3 4 CH_mtr_651 4 16 0.000342664
Punica granatum NC_045133.1 4 CH_pgr_153 7 58 0.000000392245
Trochodendron aralioides group4 4 CH_tar_477 4 13 0.000759363

Available child term results

Ontology identifier Description Number of clusters
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 12
GO:0070888 E-box binding 38

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001