Functional clusters
Information
- Type Gene Ontology
- Description cis-regulatory region sequence-specific DNA binding
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica napus | C09 | 3 | CH_bna_588 | 5 | 40 | 0.000432519 |
Brassica oleracea | C9 | 3 | CH_bol_114 | 7 | 52 | 0.0000000984688 |
Brassica rapa | A01 | 3 | CH_bra_242 | 3 | 3 | 0.000282941 |
Corylus avellana | 10 | 3 | CH_cav_285 | 4 | 14 | 0.000122295 |
Glycine max | Gm18 | 3 | CH_gma_128 | 5 | 7 | 0.0000000199243 |
Lupinus albus | Lalb_Chr20 | 3 | CH_lal_4 | 14 | 15 | 2.90844e-31 |
Lupinus albus | Lalb_Chr15 | 3 | CH_lal_95 | 5 | 6 | 0.0000000313325 |
Medicago truncatula | chr3 | 3 | CH_mtr_651 | 4 | 16 | 0.000342664 |
Punica granatum | NC_045133.1 | 3 | CH_pgr_153 | 7 | 58 | 0.000000392245 |
Trochodendron aralioides | group4 | 3 | CH_tar_477 | 4 | 13 | 0.000759363 |
Brassica napus | C09 | 4 | CH_bna_588 | 5 | 40 | 0.000432519 |
Brassica oleracea | C9 | 4 | CH_bol_114 | 7 | 52 | 0.0000000984688 |
Brassica rapa | A01 | 4 | CH_bra_242 | 3 | 3 | 0.000282941 |
Corylus avellana | 10 | 4 | CH_cav_285 | 4 | 14 | 0.000122295 |
Glycine max | Gm18 | 4 | CH_gma_128 | 5 | 7 | 0.0000000199243 |
Lupinus albus | Lalb_Chr20 | 4 | CH_lal_4 | 14 | 15 | 2.90844e-31 |
Lupinus albus | Lalb_Chr15 | 4 | CH_lal_95 | 5 | 6 | 0.0000000313325 |
Medicago truncatula | chr3 | 4 | CH_mtr_651 | 4 | 16 | 0.000342664 |
Punica granatum | NC_045133.1 | 4 | CH_pgr_153 | 7 | 58 | 0.000000392245 |
Trochodendron aralioides | group4 | 4 | CH_tar_477 | 4 | 13 | 0.000759363 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 12 |
GO:0070888 | E-box binding | 38 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |