Functional clusters
Information
- Type Gene Ontology
- Description mRNA binding
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr10 | 3 | CH_acertr_349 | 7 | 11 | 0.000158874 |
Arachis hypogaea | arahy.Tifrunner.gnm1.scaffold_36 | 3 | CH_arhy_54 | 22 | 39 | 6.85362e-20 |
Brassica napus | A10 | 3 | CH_bna_596 | 5 | 5 | 0.000489069 |
Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_702 | 6 | 8 | 0.000276524 |
Lotus japonicus | chr1 | 3 | CH_lja_368 | 7 | 12 | 0.000816428 |
Malus domestica | Chr11 | 3 | CH_mdo_718 | 9 | 28 | 0.000811543 |
Olea europaea | chr19 | 3 | CH_oeu_151 | 9 | 22 | 0.0000461906 |
Utricularia gibba | unitig_91 | 3 | CH_ugi_3 | 23 | 32 | 5.25995e-23 |
Acer truncatum | chr10 | 4 | CH_acertr_349 | 7 | 11 | 0.000158874 |
Arachis hypogaea | arahy.Tifrunner.gnm1.scaffold_36 | 4 | CH_arhy_54 | 22 | 39 | 6.85362e-20 |
Brassica napus | A10 | 4 | CH_bna_596 | 5 | 5 | 0.000489069 |
Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_702 | 6 | 8 | 0.000276524 |
Lotus japonicus | chr1 | 4 | CH_lja_368 | 7 | 12 | 0.000816428 |
Malus domestica | Chr11 | 4 | CH_mdo_718 | 9 | 28 | 0.000811543 |
Olea europaea | chr19 | 4 | CH_oeu_151 | 9 | 22 | 0.0000461906 |
Utricularia gibba | unitig_91 | 4 | CH_ugi_3 | 23 | 32 | 5.25995e-23 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0003730 | mRNA 3'-UTR binding | 10 |
GO:0030533 | triplet codon-amino acid adaptor activity | 12 |
GO:0035925 | mRNA 3'-UTR AU-rich region binding | 2 |
GO:0048027 | mRNA 5'-UTR binding | 6 |
GO:1990825 | sequence-specific mRNA binding | 4 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |