Functional clusters
Information
- Type Gene Ontology
- Description ribonucleotide binding
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Actinidia chinensis | Lachesis_group3 | 3 | CH_ach_22 | 14 | 17 | 0.00000000231627 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_169 | 23 | 37 | 0.0000000000365073 |
Amborella trichopoda | AmTr_v1.0_scaffold00085 | 3 | CH_atr_132 | 16 | 35 | 0.00000175396 |
Cannabis sativa | NC_044375.1 | 3 | CH_cansat_56 | 20 | 33 | 0.0000000000158901 |
Capsicum annuum | PGAv.1.6.scaffold619 | 3 | CH_can_355 | 14 | 23 | 0.000215941 |
Corylus avellana | 10 | 3 | CH_cav_431 | 15 | 35 | 0.000905075 |
Citrus clementina | scaffold_3 | 3 | CH_ccl_124 | 30 | 67 | 0.00000000910111 |
Citrus clementina | scaffold_9 | 3 | CH_ccl_365 | 22 | 56 | 0.000247995 |
Citrus clementina | scaffold_7 | 3 | CH_ccl_91 | 30 | 58 | 0.0000000000667899 |
Carya illinoinensis | Chr08 | 3 | CH_cil_144 | 28 | 57 | 0.000000000770282 |
Capsella rubella | scaffold_2 | 3 | CH_cru_185 | 16 | 31 | 0.0000141558 |
Erigeron canadensis | Conyza_canadensis_scaffold:9 | 3 | CH_eca_203 | 19 | 48 | 0.00000825635 |
Eucalyptus grandis | Chr11 | 3 | CH_egr_359 | 30 | 59 | 0.0000000043071 |
Gossypium hirsutum | D05 | 3 | CH_ghi_157 | 28 | 60 | 0.000000000895393 |
Gossypium raimondii | Chr09 | 3 | CH_gra_227 | 21 | 54 | 0.0000666782 |
Manihot esculenta | Chromosome07 | 3 | CH_mes_380 | 13 | 23 | 0.000460011 |
Punica granatum | NC_045130.1 | 3 | CH_pgr_333 | 24 | 70 | 0.000280294 |
Prunus persica | Pp02 | 3 | CH_ppe_337 | 25 | 73 | 0.0000797865 |
Papaver somniferum | NW_020619603.1 | 3 | CH_pso_285 | 20 | 62 | 0.000000462352 |
Populus trichocarpa | Chr04 | 3 | CH_ptr_118 | 24 | 40 | 0.000000000139649 |
Quercus lobata | 4 | 3 | CH_qlo_304 | 23 | 33 | 0.00000000159905 |
Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_293 | 28 | 80 | 0.000000213688 |
Salix brachista | GWHAAZH00000018 | 3 | CH_sbr_369 | 22 | 76 | 0.00079008 |
Solanum pennellii | Spenn-ch11 | 3 | CH_spe_266 | 15 | 40 | 0.0000328287 |
Solanum pennellii | Spenn-ch01 | 3 | CH_spe_355 | 19 | 72 | 0.000171249 |
Vigna mungo | CM024072.1 | 3 | CH_vmu_148 | 11 | 15 | 0.0000238314 |
Actinidia chinensis | Lachesis_group3 | 4 | CH_ach_22 | 14 | 17 | 0.00000000231627 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_169 | 23 | 37 | 0.0000000000365073 |
Amborella trichopoda | AmTr_v1.0_scaffold00085 | 4 | CH_atr_132 | 16 | 35 | 0.00000175396 |
Cannabis sativa | NC_044375.1 | 4 | CH_cansat_56 | 20 | 33 | 0.0000000000158901 |
Capsicum annuum | PGAv.1.6.scaffold619 | 4 | CH_can_355 | 14 | 23 | 0.000215941 |
Corylus avellana | 10 | 4 | CH_cav_431 | 15 | 35 | 0.000905075 |
Citrus clementina | scaffold_3 | 4 | CH_ccl_124 | 30 | 67 | 0.00000000910111 |
Citrus clementina | scaffold_9 | 4 | CH_ccl_365 | 22 | 56 | 0.000247995 |
Citrus clementina | scaffold_7 | 4 | CH_ccl_91 | 30 | 58 | 0.0000000000667899 |
Carya illinoinensis | Chr08 | 4 | CH_cil_144 | 28 | 57 | 0.000000000770282 |
Capsella rubella | scaffold_2 | 4 | CH_cru_185 | 16 | 31 | 0.0000141558 |
Erigeron canadensis | Conyza_canadensis_scaffold:9 | 4 | CH_eca_203 | 19 | 48 | 0.00000825635 |
Eucalyptus grandis | Chr11 | 4 | CH_egr_359 | 30 | 59 | 0.0000000043071 |
Gossypium hirsutum | D05 | 4 | CH_ghi_157 | 28 | 60 | 0.000000000895393 |
Gossypium raimondii | Chr09 | 4 | CH_gra_227 | 21 | 54 | 0.0000666782 |
Manihot esculenta | Chromosome07 | 4 | CH_mes_380 | 13 | 23 | 0.000460011 |
Punica granatum | NC_045130.1 | 4 | CH_pgr_333 | 24 | 70 | 0.000280294 |
Prunus persica | Pp02 | 4 | CH_ppe_337 | 25 | 73 | 0.0000797865 |
Papaver somniferum | NW_020619603.1 | 4 | CH_pso_285 | 20 | 62 | 0.000000462352 |
Populus trichocarpa | Chr04 | 4 | CH_ptr_118 | 24 | 40 | 0.000000000139649 |
Quercus lobata | 4 | 4 | CH_qlo_304 | 23 | 33 | 0.00000000159905 |
Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_293 | 28 | 80 | 0.000000213688 |
Salix brachista | GWHAAZH00000018 | 4 | CH_sbr_369 | 22 | 76 | 0.00079008 |
Solanum pennellii | Spenn-ch11 | 4 | CH_spe_266 | 15 | 40 | 0.0000328287 |
Solanum pennellii | Spenn-ch01 | 4 | CH_spe_355 | 19 | 72 | 0.000171249 |
Vigna mungo | CM024072.1 | 4 | CH_vmu_148 | 11 | 15 | 0.0000238314 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000062 | fatty-acyl-CoA binding | 4 |
GO:0005524 | ATP binding | 56 |
GO:0005525 | GTP binding | 14 |
GO:0010181 | FMN binding | 84 |
GO:0016208 | AMP binding | 2 |
GO:0019003 | GDP binding | 4 |
GO:0032555 | purine ribonucleotide binding | 14 |
GO:0043531 | ADP binding | 1320 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |