Functional clusters

Information

  • Type Gene Ontology
  • Description ribonucleotide binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group3 3 CH_ach_22 14 17 0.00000000231627
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 3 CH_arhy_169 23 37 0.0000000000365073
Amborella trichopoda AmTr_v1.0_scaffold00085 3 CH_atr_132 16 35 0.00000175396
Cannabis sativa NC_044375.1 3 CH_cansat_56 20 33 0.0000000000158901
Capsicum annuum PGAv.1.6.scaffold619 3 CH_can_355 14 23 0.000215941
Corylus avellana 10 3 CH_cav_431 15 35 0.000905075
Citrus clementina scaffold_3 3 CH_ccl_124 30 67 0.00000000910111
Citrus clementina scaffold_9 3 CH_ccl_365 22 56 0.000247995
Citrus clementina scaffold_7 3 CH_ccl_91 30 58 0.0000000000667899
Carya illinoinensis Chr08 3 CH_cil_144 28 57 0.000000000770282
Capsella rubella scaffold_2 3 CH_cru_185 16 31 0.0000141558
Erigeron canadensis Conyza_canadensis_scaffold:9 3 CH_eca_203 19 48 0.00000825635
Eucalyptus grandis Chr11 3 CH_egr_359 30 59 0.0000000043071
Gossypium hirsutum D05 3 CH_ghi_157 28 60 0.000000000895393
Gossypium raimondii Chr09 3 CH_gra_227 21 54 0.0000666782
Manihot esculenta Chromosome07 3 CH_mes_380 13 23 0.000460011
Punica granatum NC_045130.1 3 CH_pgr_333 24 70 0.000280294
Prunus persica Pp02 3 CH_ppe_337 25 73 0.0000797865
Papaver somniferum NW_020619603.1 3 CH_pso_285 20 62 0.000000462352
Populus trichocarpa Chr04 3 CH_ptr_118 24 40 0.000000000139649
Quercus lobata 4 3 CH_qlo_304 23 33 0.00000000159905
Rosa chinensis RcHm_v2.0_Chr7 3 CH_rch_293 28 80 0.000000213688
Salix brachista GWHAAZH00000018 3 CH_sbr_369 22 76 0.00079008
Solanum pennellii Spenn-ch11 3 CH_spe_266 15 40 0.0000328287
Solanum pennellii Spenn-ch01 3 CH_spe_355 19 72 0.000171249
Vigna mungo CM024072.1 3 CH_vmu_148 11 15 0.0000238314
Actinidia chinensis Lachesis_group3 4 CH_ach_22 14 17 0.00000000231627
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 4 CH_arhy_169 23 37 0.0000000000365073
Amborella trichopoda AmTr_v1.0_scaffold00085 4 CH_atr_132 16 35 0.00000175396
Cannabis sativa NC_044375.1 4 CH_cansat_56 20 33 0.0000000000158901
Capsicum annuum PGAv.1.6.scaffold619 4 CH_can_355 14 23 0.000215941
Corylus avellana 10 4 CH_cav_431 15 35 0.000905075
Citrus clementina scaffold_3 4 CH_ccl_124 30 67 0.00000000910111
Citrus clementina scaffold_9 4 CH_ccl_365 22 56 0.000247995
Citrus clementina scaffold_7 4 CH_ccl_91 30 58 0.0000000000667899
Carya illinoinensis Chr08 4 CH_cil_144 28 57 0.000000000770282
Capsella rubella scaffold_2 4 CH_cru_185 16 31 0.0000141558
Erigeron canadensis Conyza_canadensis_scaffold:9 4 CH_eca_203 19 48 0.00000825635
Eucalyptus grandis Chr11 4 CH_egr_359 30 59 0.0000000043071
Gossypium hirsutum D05 4 CH_ghi_157 28 60 0.000000000895393
Gossypium raimondii Chr09 4 CH_gra_227 21 54 0.0000666782
Manihot esculenta Chromosome07 4 CH_mes_380 13 23 0.000460011
Punica granatum NC_045130.1 4 CH_pgr_333 24 70 0.000280294
Prunus persica Pp02 4 CH_ppe_337 25 73 0.0000797865
Papaver somniferum NW_020619603.1 4 CH_pso_285 20 62 0.000000462352
Populus trichocarpa Chr04 4 CH_ptr_118 24 40 0.000000000139649
Quercus lobata 4 4 CH_qlo_304 23 33 0.00000000159905
Rosa chinensis RcHm_v2.0_Chr7 4 CH_rch_293 28 80 0.000000213688
Salix brachista GWHAAZH00000018 4 CH_sbr_369 22 76 0.00079008
Solanum pennellii Spenn-ch11 4 CH_spe_266 15 40 0.0000328287
Solanum pennellii Spenn-ch01 4 CH_spe_355 19 72 0.000171249
Vigna mungo CM024072.1 4 CH_vmu_148 11 15 0.0000238314

Available child term results

Ontology identifier Description Number of clusters
GO:0000062 fatty-acyl-CoA binding 4
GO:0005524 ATP binding 56
GO:0005525 GTP binding 14
GO:0010181 FMN binding 84
GO:0016208 AMP binding 2
GO:0019003 GDP binding 4
GO:0032555 purine ribonucleotide binding 14
GO:0043531 ADP binding 1320

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001