Functional clusters
Information
- Type Gene Ontology
- Description protein dimerization activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 3 | CH_arhy_633 | 5 | 5 | 0.000529835 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 3 | CH_arhy_634 | 5 | 5 | 0.000529835 |
| Camellia sinensis var. sinensis | Chr2 | 3 | CH_camsi_335 | 12 | 41 | 0.00000108739 |
| Camellia sinensis var. sinensis | Chr15 | 3 | CH_camsi_457 | 6 | 7 | 0.0000226238 |
| Camellia sinensis var. sinensis | Chr5 | 3 | CH_camsi_661 | 6 | 9 | 0.000262032 |
| Capsicum annuum | PGAv.1.6.scaffold504 | 3 | CH_can_141 | 9 | 13 | 0.0000000229526 |
| Capsicum annuum | PGAv.1.6.scaffold1038 | 3 | CH_can_334 | 5 | 5 | 0.000139992 |
| Capsicum annuum | PGAv.1.6.scaffold730 | 3 | CH_can_74 | 14 | 27 | 0.00000000000283956 |
| Citrus clementina | scaffold_9 | 3 | CH_ccl_19 | 21 | 27 | 2.04367e-24 |
| Carya illinoinensis | Chr05 | 3 | CH_cil_443 | 5 | 5 | 0.000327715 |
| Capsella rubella | scaffold_1 | 3 | CH_cru_286 | 6 | 9 | 0.000334028 |
| Capsella rubella | scaffold_2 | 3 | CH_cru_54 | 9 | 9 | 0.0000000000513687 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_533 | 7 | 9 | 0.00000164196 |
| Fragaria vesca | Fvb4 | 3 | CH_fve_269 | 5 | 5 | 0.0000907651 |
| Gossypium hirsutum | D06 | 3 | CH_ghi_178 | 8 | 8 | 0.00000000577939 |
| Gossypium hirsutum | D04 | 3 | CH_ghi_488 | 7 | 12 | 0.000180539 |
| Gossypium raimondii | Chr10 | 3 | CH_gra_56 | 11 | 12 | 0.00000000000133867 |
| Hydrangea macrophylla | Hma1.2p1_0696F.1 | 3 | CH_hma_51 | 10 | 20 | 0.0000000194375 |
| Lupinus albus | Lalb_Chr18 | 3 | CH_lal_166 | 9 | 17 | 0.00000272107 |
| Lupinus albus | Lalb_Chr14 | 3 | CH_lal_394 | 6 | 9 | 0.000700404 |
| Lotus japonicus | chr3 | 3 | CH_lja_247 | 9 | 23 | 0.000127984 |
| Medicago truncatula | chr2 | 3 | CH_mtr_243 | 9 | 15 | 0.0000000180359 |
| Nelumbo nucifera | chr2 | 3 | CH_nnu_197 | 5 | 5 | 0.0000557525 |
| Petunia axillaris | Peaxi162Scf00611 | 3 | CH_pax_152 | 6 | 7 | 0.0000144775 |
| Prunus persica | Pp01 | 3 | CH_ppe_256 | 7 | 10 | 0.00000619641 |
| Prunus persica | Pp05 | 3 | CH_ppe_346 | 5 | 5 | 0.000120614 |
| Pisum sativum | chr3LG5 | 3 | CH_psa_196 | 11 | 52 | 0.0000258396 |
| Pisum sativum | chr4LG4 | 3 | CH_psa_301 | 5 | 6 | 0.000261238 |
| Papaver somniferum | NC_039360.1 | 3 | CH_pso_537 | 9 | 31 | 0.000199517 |
| Papaver somniferum | NW_020651082.1 | 3 | CH_pso_658 | 8 | 25 | 0.000663961 |
| Phaseolus vulgaris | Chr04 | 3 | CH_pvu_165 | 9 | 18 | 0.00000282879 |
| Phaseolus vulgaris | Chr10 | 3 | CH_pvu_275 | 5 | 5 | 0.000217953 |
| Quercus lobata | 6 | 3 | CH_qlo_550 | 6 | 6 | 0.00000257227 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_1153 | 8 | 22 | 0.000150515 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_1244 | 6 | 10 | 0.000339835 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_1353 | 6 | 11 | 0.000735737 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_180 | 12 | 13 | 8.84841e-16 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_494 | 9 | 13 | 0.00000000735025 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_743 | 8 | 14 | 0.00000161411 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_898 | 7 | 12 | 0.0000233753 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 4 | CH_arhy_633 | 5 | 5 | 0.000529835 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 4 | CH_arhy_634 | 5 | 5 | 0.000529835 |
| Camellia sinensis var. sinensis | Chr2 | 4 | CH_camsi_335 | 12 | 41 | 0.00000108739 |
| Camellia sinensis var. sinensis | Chr15 | 4 | CH_camsi_457 | 6 | 7 | 0.0000226238 |
| Camellia sinensis var. sinensis | Chr5 | 4 | CH_camsi_661 | 6 | 9 | 0.000262032 |
| Capsicum annuum | PGAv.1.6.scaffold504 | 4 | CH_can_141 | 9 | 13 | 0.0000000229526 |
| Capsicum annuum | PGAv.1.6.scaffold1038 | 4 | CH_can_334 | 5 | 5 | 0.000139992 |
| Capsicum annuum | PGAv.1.6.scaffold730 | 4 | CH_can_74 | 14 | 27 | 0.00000000000283956 |
| Citrus clementina | scaffold_9 | 4 | CH_ccl_19 | 21 | 27 | 2.04367e-24 |
| Carya illinoinensis | Chr05 | 4 | CH_cil_443 | 5 | 5 | 0.000327715 |
| Capsella rubella | scaffold_1 | 4 | CH_cru_286 | 6 | 9 | 0.000334028 |
| Capsella rubella | scaffold_2 | 4 | CH_cru_54 | 9 | 9 | 0.0000000000513687 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_533 | 7 | 9 | 0.00000164196 |
| Fragaria vesca | Fvb4 | 4 | CH_fve_269 | 5 | 5 | 0.0000907651 |
| Gossypium hirsutum | D06 | 4 | CH_ghi_178 | 8 | 8 | 0.00000000577939 |
| Gossypium hirsutum | D04 | 4 | CH_ghi_488 | 7 | 12 | 0.000180539 |
| Gossypium raimondii | Chr10 | 4 | CH_gra_56 | 11 | 12 | 0.00000000000133867 |
| Hydrangea macrophylla | Hma1.2p1_0696F.1 | 4 | CH_hma_51 | 10 | 20 | 0.0000000194375 |
| Lupinus albus | Lalb_Chr18 | 4 | CH_lal_166 | 9 | 17 | 0.00000272107 |
| Lupinus albus | Lalb_Chr14 | 4 | CH_lal_394 | 6 | 9 | 0.000700404 |
| Lotus japonicus | chr3 | 4 | CH_lja_247 | 9 | 23 | 0.000127984 |
| Medicago truncatula | chr2 | 4 | CH_mtr_243 | 9 | 15 | 0.0000000180359 |
| Nelumbo nucifera | chr2 | 4 | CH_nnu_197 | 5 | 5 | 0.0000557525 |
| Petunia axillaris | Peaxi162Scf00611 | 4 | CH_pax_152 | 6 | 7 | 0.0000144775 |
| Prunus persica | Pp01 | 4 | CH_ppe_256 | 7 | 10 | 0.00000619641 |
| Prunus persica | Pp05 | 4 | CH_ppe_346 | 5 | 5 | 0.000120614 |
| Pisum sativum | chr3LG5 | 4 | CH_psa_196 | 11 | 52 | 0.0000258396 |
| Pisum sativum | chr4LG4 | 4 | CH_psa_301 | 5 | 6 | 0.000261238 |
| Papaver somniferum | NC_039360.1 | 4 | CH_pso_537 | 9 | 31 | 0.000199517 |
| Papaver somniferum | NW_020651082.1 | 4 | CH_pso_658 | 8 | 25 | 0.000663961 |
| Phaseolus vulgaris | Chr04 | 4 | CH_pvu_165 | 9 | 18 | 0.00000282879 |
| Phaseolus vulgaris | Chr10 | 4 | CH_pvu_275 | 5 | 5 | 0.000217953 |
| Quercus lobata | 6 | 4 | CH_qlo_550 | 6 | 6 | 0.00000257227 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_1153 | 8 | 22 | 0.000150515 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_1244 | 6 | 10 | 0.000339835 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_1353 | 6 | 11 | 0.000735737 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_180 | 12 | 13 | 8.84841e-16 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_494 | 9 | 13 | 0.00000000735025 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_743 | 8 | 14 | 0.00000161411 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_898 | 7 | 12 | 0.0000233753 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0042803 | protein homodimerization activity | 2 |
| GO:0046982 | protein heterodimerization activity | 110 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |