Functional clusters

Information

  • Type Gene Ontology
  • Description folic acid binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 3 CH_acertr_393 2 2 0.000211491
Aquilegia oxysepala CHR01 3 CH_aox_293 2 3 0.000721742
Capsicum annuum PGAv.1.6.scaffold996 3 CH_can_433 2 2 0.000495663
Cicer arietinum L. Ca_LG1_v3 3 CH_car_164 2 2 0.00023349
Corylus avellana 5 3 CH_cav_342 2 2 0.000230008
Coffea canephora chr5 3 CH_ccan_287 2 6 0.000191648
Citrus clementina scaffold_2 3 CH_ccl_402 2 2 0.000492187
Carya illinoinensis Chr04 3 CH_cil_466 2 2 0.000371897
Cucumis sativus L. chr6 3 CH_csa_262 2 3 0.000751231
Davidia involucrata GWHABJS00000001 3 CH_din_414 2 2 0.000750188
Davidia involucrata GWHABJS00000013 3 CH_din_415 2 2 0.000750188
Erythranthe guttata scaffold_8 3 CH_egut_340 2 2 0.000218444
Fragaria x ananassa Fvb6-1 3 CH_fan_139 3 3 0.000000112988
Fragaria vesca Fvb6 3 CH_fve_302 2 2 0.00017673
Gossypium hirsutum D02 3 CH_ghi_582 2 2 0.000400523
Gossypium hirsutum D08 3 CH_ghi_583 2 2 0.000400523
Helianthus annuus HanXRQChr17 3 CH_han_207 3 3 0.0000000089598
Lupinus albus Lalb_Chr22 3 CH_lal_301 2 2 0.000157447
Lotus japonicus chr3 3 CH_lja_284 2 2 0.000214523
Lonicera japonica GWHAAZE00000001 3 CH_lonja_451 2 2 0.000179662
Magnolia biondii Chr02 3 CH_mbi_614 2 2 0.000485661
Malus domestica Chr17 3 CH_mdo_191 3 3 0.0000000431413
Malus domestica Chr09 3 CH_mdo_648 2 2 0.000568817
Manihot esculenta Chromosome13 3 CH_mes_362 2 2 0.000366379
Medicago truncatula chr2 3 CH_mtr_238 3 3 0.0000000101287
Nelumbo nucifera chr1 3 CH_nnu_230 2 2 0.000144505
Olea europaea chr13 3 CH_oeu_152 3 16 0.0000478156
Petunia axillaris Peaxi162Scf00132 3 CH_pax_64 3 3 0.0000000297005
Prunus persica Pp03 3 CH_ppe_391 2 2 0.000223789
Pisum sativum chr5LG3 3 CH_psa_285 2 2 0.00015649
Papaver somniferum NC_039358.1 3 CH_pso_267 3 5 0.000000266455
Populus trichocarpa Chr13 3 CH_ptr_430 2 2 0.000578001
Quercus lobata 10 3 CH_qlo_414 3 4 0.0000000639718
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_595 2 2 0.000119596
Salvia bowleyana GWHASIU00000001 3 CH_sbo_515 2 2 0.000955457
Salix brachista GWHAAZH00000013 3 CH_sbr_325 2 2 0.000378084
Sechium edule LG05 3 CH_sed_74 3 3 0.0000000305391
Solanum lycopersicum SL4.0ch07 3 CH_sly_445 2 2 0.000176082
Solanum pennellii Spenn-ch07 3 CH_spe_347 2 2 0.000133437
Solanum tuberosum ST4.03ch07 3 CH_stu_474 2 2 0.000153736
Trochodendron aralioides group0 3 CH_tar_407 2 2 0.00036022
Theobroma cacao Chromosome_2 3 CH_tca_337 2 2 0.000219716
Trifolium pratense Tp57577_TGAC_v2_LG1 3 CH_tpr_73 3 3 0.0000000343818
Vitis vinifera chr12 3 CH_vvi_338 2 2 0.000228189
Acer truncatum chr6 4 CH_acertr_393 2 2 0.000211491
Aquilegia oxysepala CHR01 4 CH_aox_293 2 3 0.000721742
Capsicum annuum PGAv.1.6.scaffold996 4 CH_can_433 2 2 0.000495663
Cicer arietinum L. Ca_LG1_v3 4 CH_car_164 2 2 0.00023349
Corylus avellana 5 4 CH_cav_342 2 2 0.000230008
Coffea canephora chr5 4 CH_ccan_287 2 6 0.000191648
Citrus clementina scaffold_2 4 CH_ccl_402 2 2 0.000492187
Carya illinoinensis Chr04 4 CH_cil_466 2 2 0.000371897
Cucumis sativus L. chr6 4 CH_csa_262 2 3 0.000751231
Davidia involucrata GWHABJS00000001 4 CH_din_414 2 2 0.000750188
Davidia involucrata GWHABJS00000013 4 CH_din_415 2 2 0.000750188
Erythranthe guttata scaffold_8 4 CH_egut_340 2 2 0.000218444
Fragaria x ananassa Fvb6-1 4 CH_fan_139 3 3 0.000000112988
Fragaria vesca Fvb6 4 CH_fve_302 2 2 0.00017673
Gossypium hirsutum D02 4 CH_ghi_582 2 2 0.000400523
Gossypium hirsutum D08 4 CH_ghi_583 2 2 0.000400523
Helianthus annuus HanXRQChr17 4 CH_han_207 3 3 0.0000000089598
Lupinus albus Lalb_Chr22 4 CH_lal_301 2 2 0.000157447
Lotus japonicus chr3 4 CH_lja_284 2 2 0.000214523
Lonicera japonica GWHAAZE00000001 4 CH_lonja_451 2 2 0.000179662
Magnolia biondii Chr02 4 CH_mbi_614 2 2 0.000485661
Malus domestica Chr17 4 CH_mdo_191 3 3 0.0000000431413
Malus domestica Chr09 4 CH_mdo_648 2 2 0.000568817
Manihot esculenta Chromosome13 4 CH_mes_362 2 2 0.000366379
Medicago truncatula chr2 4 CH_mtr_238 3 3 0.0000000101287
Nelumbo nucifera chr1 4 CH_nnu_230 2 2 0.000144505
Olea europaea chr13 4 CH_oeu_152 3 16 0.0000478156
Petunia axillaris Peaxi162Scf00132 4 CH_pax_64 3 3 0.0000000297005
Prunus persica Pp03 4 CH_ppe_391 2 2 0.000223789
Pisum sativum chr5LG3 4 CH_psa_285 2 2 0.00015649
Papaver somniferum NC_039358.1 4 CH_pso_267 3 5 0.000000266455
Populus trichocarpa Chr13 4 CH_ptr_430 2 2 0.000578001
Quercus lobata 10 4 CH_qlo_414 3 4 0.0000000639718
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_595 2 2 0.000119596
Salvia bowleyana GWHASIU00000001 4 CH_sbo_515 2 2 0.000955457
Salix brachista GWHAAZH00000013 4 CH_sbr_325 2 2 0.000378084
Sechium edule LG05 4 CH_sed_74 3 3 0.0000000305391
Solanum lycopersicum SL4.0ch07 4 CH_sly_445 2 2 0.000176082
Solanum pennellii Spenn-ch07 4 CH_spe_347 2 2 0.000133437
Solanum tuberosum ST4.03ch07 4 CH_stu_474 2 2 0.000153736
Trochodendron aralioides group0 4 CH_tar_407 2 2 0.00036022
Theobroma cacao Chromosome_2 4 CH_tca_337 2 2 0.000219716
Trifolium pratense Tp57577_TGAC_v2_LG1 4 CH_tpr_73 3 3 0.0000000343818
Vitis vinifera chr12 4 CH_vvi_338 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001