Functional clusters
Information
- Type Gene Ontology
- Description RNA polymerase II transcription regulatory region sequence-specific DNA binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC02 | 3 | CH_bca_420 | 4 | 5 | 0.00000984894 |
| Brassica carinata | ChrC04 | 3 | CH_bca_490 | 4 | 6 | 0.0000294965 |
| Brassica oleracea | C4 | 3 | CH_bol_317 | 4 | 11 | 0.000290555 |
| Brassica rapa | A02 | 3 | CH_bra_156 | 4 | 6 | 0.000027218 |
| Cannabis sativa | NC_044379.1 | 3 | CH_cansat_354 | 3 | 4 | 0.000677849 |
| Cicer arietinum L. | Ca_LG4_v3 | 3 | CH_car_9 | 5 | 5 | 0.000000000264971 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2587 | 3 | CH_cqu_451 | 3 | 3 | 0.000320886 |
| Durio zibethinus | NW_019167915.1 | 3 | CH_dzi_354 | 3 | 3 | 0.000951382 |
| Durio zibethinus | NW_019167938.1 | 3 | CH_dzi_355 | 3 | 3 | 0.000951382 |
| Eucalyptus grandis | Chr11 | 3 | CH_egr_29 | 14 | 18 | 3.13689e-30 |
| Eucalyptus grandis | Chr04 | 3 | CH_egr_827 | 3 | 3 | 0.000390905 |
| Lupinus albus | Lalb_Chr02 | 3 | CH_lal_154 | 4 | 4 | 0.00000170066 |
| Lupinus albus | Lalb_Chr21 | 3 | CH_lal_390 | 3 | 3 | 0.000668098 |
| Punica granatum | NC_045132.1 | 3 | CH_pgr_364 | 3 | 3 | 0.000617813 |
| Punica granatum | NC_045128.1 | 3 | CH_pgr_99 | 8 | 33 | 0.00000000151773 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_56 | 9 | 66 | 0.000000000374302 |
| Pisum sativum | chr4LG4 | 3 | CH_psa_99 | 6 | 21 | 0.000000100683 |
| Papaver somniferum | NC_039363.1 | 3 | CH_pso_165 | 6 | 14 | 0.00000000103724 |
| Papaver somniferum | NW_020647637.1 | 3 | CH_pso_193 | 5 | 7 | 0.00000000594488 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_313 | 4 | 5 | 0.00000114349 |
| Papaver somniferum | NW_020631041.1 | 3 | CH_pso_667 | 3 | 4 | 0.000731631 |
| Quercus lobata | 11 | 3 | CH_qlo_38 | 12 | 17 | 5.9982e-26 |
| Brassica carinata | ChrC02 | 4 | CH_bca_420 | 4 | 5 | 0.00000984894 |
| Brassica carinata | ChrC04 | 4 | CH_bca_490 | 4 | 6 | 0.0000294965 |
| Brassica oleracea | C4 | 4 | CH_bol_317 | 4 | 11 | 0.000290555 |
| Brassica rapa | A02 | 4 | CH_bra_156 | 4 | 6 | 0.000027218 |
| Cannabis sativa | NC_044379.1 | 4 | CH_cansat_354 | 3 | 4 | 0.000677849 |
| Cicer arietinum L. | Ca_LG4_v3 | 4 | CH_car_9 | 5 | 5 | 0.000000000264971 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2587 | 4 | CH_cqu_451 | 3 | 3 | 0.000320886 |
| Durio zibethinus | NW_019167915.1 | 4 | CH_dzi_354 | 3 | 3 | 0.000951382 |
| Durio zibethinus | NW_019167938.1 | 4 | CH_dzi_355 | 3 | 3 | 0.000951382 |
| Eucalyptus grandis | Chr11 | 4 | CH_egr_29 | 14 | 18 | 3.13689e-30 |
| Eucalyptus grandis | Chr04 | 4 | CH_egr_827 | 3 | 3 | 0.000390905 |
| Lupinus albus | Lalb_Chr02 | 4 | CH_lal_154 | 4 | 4 | 0.00000170066 |
| Lupinus albus | Lalb_Chr21 | 4 | CH_lal_390 | 3 | 3 | 0.000668098 |
| Punica granatum | NC_045132.1 | 4 | CH_pgr_364 | 3 | 3 | 0.000617813 |
| Punica granatum | NC_045128.1 | 4 | CH_pgr_99 | 8 | 33 | 0.00000000151773 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_56 | 9 | 66 | 0.000000000374302 |
| Pisum sativum | chr4LG4 | 4 | CH_psa_99 | 6 | 21 | 0.000000100683 |
| Papaver somniferum | NC_039363.1 | 4 | CH_pso_165 | 6 | 14 | 0.00000000103724 |
| Papaver somniferum | NW_020647637.1 | 4 | CH_pso_193 | 5 | 7 | 0.00000000594488 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_313 | 4 | 5 | 0.00000114349 |
| Papaver somniferum | NW_020631041.1 | 4 | CH_pso_667 | 3 | 4 | 0.000731631 |
| Quercus lobata | 11 | 4 | CH_qlo_38 | 12 | 17 | 5.9982e-26 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 12 |
| GO:0070888 | E-box binding | 38 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |