Functional clusters

Information

  • Type Gene Ontology
  • Description calmodulin binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 3 CH_acertr_518 3 3 0.00084662
Actinidia chinensis Lachesis_group5 3 CH_ach_89 4 4 0.00000581076
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 3 CH_arhy_268 5 6 0.0000000961614
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 3 CH_arhy_387 4 4 0.00000542054
Arabidopsis thaliana Chr1 3 CH_ath_78 7 11 0.000000000265123
Brassica carinata ChrC06 3 CH_bca_979 3 3 0.000886746
Brassica carinata ChrB07 3 CH_bca_980 3 3 0.000886746
Beta vulgaris Chr4_EL10_PGA_scaffold1 3 CH_bvu_122 5 10 0.0000034294
Camellia sinensis var. sinensis Chr15 3 CH_camsi_32 11 21 8.51262e-19
Capsicum annuum PGAv.1.6.scaffold411 3 CH_can_325 5 17 0.0000969818
Capsicum annuum PGAv.1.6.scaffold853 3 CH_can_343 4 7 0.000156852
Coffea canephora chr4 3 CH_ccan_36 6 49 0.000000000313042
Carya illinoinensis Chr15 3 CH_cil_284 4 4 0.00000863263
Citrullus lanatus CG_Chr03 3 CH_cla_15 11 47 0.00000000000179755
Cucumis melo chr02 3 CH_cme_41 9 32 0.0000000000278629
Cucumis sativus L. chr1 3 CH_csa_11 12 24 3.03805e-19
Daucus carota DCARv2_Chr9 3 CH_dca_331 4 6 0.000353219
Erigeron canadensis Conyza_canadensis_scaffold:7 3 CH_eca_435 3 3 0.000550017
Eucalyptus grandis Chr05 3 CH_egr_235 8 13 0.00000000000195572
Eucalyptus grandis Chr01 3 CH_egr_423 6 11 0.0000000504318
Eucalyptus grandis Chr05 3 CH_egr_531 5 8 0.00000162999
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_320 4 6 0.0000450967
Oryza sativa ssp. japonica chr11 3 CH_osa_260 6 23 0.0000308939
Petunia axillaris Peaxi162Scf00648 3 CH_pax_358 3 3 0.000995295
Petunia axillaris Peaxi162Scf00017 3 CH_pax_68 5 6 0.0000000603742
Punica granatum NC_045132.1 3 CH_pgr_192 5 7 0.0000032359
Rosa chinensis RcHm_v2.0_Chr3 3 CH_rch_658 3 3 0.000280061
Rhododendron simsii chr08 3 CH_rsi_264 4 4 0.000002354
Salvia bowleyana GWHASIU00000003 3 CH_sbo_214 5 10 0.000000702449
Sechium edule LG04 3 CH_sed_50 6 6 0.000000000144346
Solanum lycopersicum SL4.0ch03 3 CH_sly_122 6 7 0.0000000042836
Solanum pennellii Spenn-ch03 3 CH_spe_58 6 7 0.0000000000554269
Selenicereus undatus Scaffold_33680 3 CH_sun_111 4 7 0.0000849374
Trifolium pratense Tp57577_TGAC_v2_LG6 3 CH_tpr_130 4 4 0.00000303474
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_110 5 6 0.000000131051
Vigna mungo CM024070.1 3 CH_vmu_123 4 4 0.00000317371
Vitis vinifera chr17 3 CH_vvi_405 3 3 0.000686303
Acer truncatum chr1 4 CH_acertr_518 3 3 0.00084662
Actinidia chinensis Lachesis_group5 4 CH_ach_89 4 4 0.00000581076
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 4 CH_arhy_268 5 6 0.0000000961614
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 4 CH_arhy_387 4 4 0.00000542054
Arabidopsis thaliana Chr1 4 CH_ath_78 7 11 0.000000000265123
Brassica carinata ChrC06 4 CH_bca_979 3 3 0.000886746
Brassica carinata ChrB07 4 CH_bca_980 3 3 0.000886746
Beta vulgaris Chr4_EL10_PGA_scaffold1 4 CH_bvu_122 5 10 0.0000034294
Camellia sinensis var. sinensis Chr15 4 CH_camsi_32 11 21 8.51262e-19
Capsicum annuum PGAv.1.6.scaffold411 4 CH_can_325 5 17 0.0000969818
Capsicum annuum PGAv.1.6.scaffold853 4 CH_can_343 4 7 0.000156852
Coffea canephora chr4 4 CH_ccan_36 6 49 0.000000000313042
Carya illinoinensis Chr15 4 CH_cil_284 4 4 0.00000863263
Citrullus lanatus CG_Chr03 4 CH_cla_15 11 47 0.00000000000179755
Cucumis melo chr02 4 CH_cme_41 9 32 0.0000000000278629
Cucumis sativus L. chr1 4 CH_csa_11 12 24 3.03805e-19
Daucus carota DCARv2_Chr9 4 CH_dca_331 4 6 0.000353219
Erigeron canadensis Conyza_canadensis_scaffold:7 4 CH_eca_435 3 3 0.000550017
Eucalyptus grandis Chr05 4 CH_egr_235 8 13 0.00000000000195572
Eucalyptus grandis Chr01 4 CH_egr_423 6 11 0.0000000504318
Eucalyptus grandis Chr05 4 CH_egr_531 5 8 0.00000162999
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_320 4 6 0.0000450967
Oryza sativa ssp. japonica chr11 4 CH_osa_260 6 23 0.0000308939
Petunia axillaris Peaxi162Scf00648 4 CH_pax_358 3 3 0.000995295
Petunia axillaris Peaxi162Scf00017 4 CH_pax_68 5 6 0.0000000603742
Punica granatum NC_045132.1 4 CH_pgr_192 5 7 0.0000032359
Rosa chinensis RcHm_v2.0_Chr3 4 CH_rch_658 3 3 0.000280061
Rhododendron simsii chr08 4 CH_rsi_264 4 4 0.000002354
Salvia bowleyana GWHASIU00000003 4 CH_sbo_214 5 10 0.000000702449
Sechium edule LG04 4 CH_sed_50 6 6 0.000000000144346
Solanum lycopersicum SL4.0ch03 4 CH_sly_122 6 7 0.0000000042836
Solanum pennellii Spenn-ch03 4 CH_spe_58 6 7 0.0000000000554269
Selenicereus undatus Scaffold_33680 4 CH_sun_111 4 7 0.0000849374
Trifolium pratense Tp57577_TGAC_v2_LG6 4 CH_tpr_130 4 4 0.00000303474
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_110 5 6 0.000000131051
Vigna mungo CM024070.1 4 CH_vmu_123 4 4 0.00000317371
Vitis vinifera chr17 4 CH_vvi_405 3 3 0.000686303

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001