Functional clusters

Information

  • Type Gene Ontology
  • Description copper ion binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 3 CH_acertr_401 6 26 0.000225026
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 3 CH_amhyb_170 4 6 0.000283942
Brassica carinata ChrB08 3 CH_bca_511 4 4 0.0000419388
Camellia sinensis var. sinensis Chr9 3 CH_camsi_192 7 14 0.0000000106131
Camellia sinensis var. sinensis Chr4 3 CH_camsi_35 11 16 7.39157e-18
Camellia sinensis var. sinensis Chr10 3 CH_camsi_366 7 27 0.0000025974
Cannabis sativa NC_044375.1 3 CH_cansat_324 5 19 0.000534642
Capsicum annuum PGAv.1.6.scaffold203 3 CH_can_249 5 10 0.0000144669
Capsicum annuum PGAv.1.6.scaffold21 3 CH_can_277 4 5 0.0000624659
Corylus avellana 7 3 CH_cav_16 14 19 4.25267e-23
Coffea canephora chr10 3 CH_ccan_38 6 30 0.000000000425161
Carpinus fangiana Cfa07 3 CH_cfa_26 10 15 0.00000000000000439676
Citrullus lanatus CG_Chr03 3 CH_cla_147 4 6 0.00047698
Cucumis sativus L. chr4 3 CH_csa_130 5 7 0.00000293742
Davidia involucrata GWHABJS00000002 3 CH_din_128 6 10 0.000000286664
Davidia involucrata GWHABJS00000016 3 CH_din_305 4 5 0.000215909
Davidia involucrata GWHABJS00000011 3 CH_din_53 9 18 0.0000000000113713
Durio zibethinus NW_019167949.1 3 CH_dzi_195 4 4 0.0000395998
Eucalyptus grandis Chr06 3 CH_egr_301 7 8 0.000000000155175
Eucalyptus grandis Chr09 3 CH_egr_454 8 26 0.000000179145
Eucalyptus grandis Chr02 3 CH_egr_498 6 10 0.0000006109
Fragaria x ananassa Fvb2-3 3 CH_fan_126 6 8 0.0000000353302
Gossypium hirsutum D13 3 CH_ghi_116 7 7 0.0000000000274357
Gossypium hirsutum A13 3 CH_ghi_176 6 6 0.00000000442857
Gossypium hirsutum D05 3 CH_ghi_49 10 10 6.43995e-18
Gossypium hirsutum A04 3 CH_ghi_626 4 5 0.000570385
Gossypium hirsutum A06 3 CH_ghi_627 4 5 0.000570385
Gossypium hirsutum D06 3 CH_ghi_628 4 5 0.000570385
Gossypium hirsutum A05 3 CH_ghi_80 11 24 0.0000000000000917465
Glycine max Gm08 3 CH_gma_183 5 5 0.000000315224
Gossypium raimondii Chr13 3 CH_gra_137 5 5 0.000000465152
Gossypium raimondii Chr09 3 CH_gra_141 6 10 0.000000622236
Gossypium raimondii Chr09 3 CH_gra_16 12 13 2.74457e-21
Gossypium raimondii Chr10 3 CH_gra_308 4 5 0.000353695
Helianthus annuus HanXRQChr12 3 CH_han_166 6 6 0.00000000078503
Lupinus albus Lalb_Chr19 3 CH_lal_392 4 6 0.000694294
Lotus japonicus chr5 3 CH_lja_108 5 5 0.000000238942
Lonicera japonica GWHAAZE00000004 3 CH_lonja_127 7 7 0.0000000000064437
Lonicera japonica GWHAAZE00000007 3 CH_lonja_144 7 8 0.0000000000512968
Lonicera japonica GWHAAZE00000008 3 CH_lonja_284 5 6 0.0000012204
Malus domestica Chr10 3 CH_mdo_224 5 5 0.000000188918
Malus domestica Chr03 3 CH_mdo_397 4 4 0.0000370377
Manihot esculenta Chromosome08 3 CH_mes_220 7 24 0.00000430171
Medicago truncatula chr3 3 CH_mtr_117 7 8 0.00000000000301265
Nelumbo nucifera chr4 3 CH_nnu_106 5 6 0.00000044775
Olea europaea scaffold1252 3 CH_oeu_196 4 5 0.000114548
Olea europaea chr14 3 CH_oeu_82 5 6 0.00000067499
Papaver somniferum NC_039363.1 3 CH_pso_377 4 4 0.0000115013
Papaver somniferum NC_039358.1 3 CH_pso_378 4 4 0.0000115013
Quercus lobata CM012294 3 CH_qlo_846 4 5 0.000177931
Quercus lobata 1 3 CH_qlo_921 5 14 0.000374145
Rosa chinensis RcHm_v2.0_Chr1 3 CH_rch_284 9 60 0.000000164638
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_776 7 71 0.000916306
Rhododendron simsii chr05 3 CH_rsi_129 7 9 0.0000000002368
Rhododendron simsii chr10 3 CH_rsi_70 9 11 0.0000000000000114713
Salvia bowleyana GWHASIU00000001 3 CH_sbo_465 5 18 0.000586168
Salvia bowleyana GWHASIU00000002 3 CH_sbo_54 10 16 8.03423e-16
Salix brachista GWHAAZH00000005 3 CH_sbr_225 4 4 0.0000495457
Salix brachista GWHAAZH00000019 3 CH_sbr_330 7 45 0.000431582
Salix brachista GWHAAZH00000006 3 CH_sbr_77 6 6 0.00000000189949
Sequoiadendron giganteum chr3 3 CH_sgi_1014 4 4 0.0000516453
Sequoiadendron giganteum chr2 3 CH_sgi_112 12 14 6.03721e-21
Sequoiadendron giganteum chr1 3 CH_sgi_1190 4 5 0.000257002
Sequoiadendron giganteum chr5 3 CH_sgi_298 8 10 0.00000000000270958
Sequoiadendron giganteum chr10 3 CH_sgi_446 6 6 0.00000000178733
Sequoiadendron giganteum chr2 3 CH_sgi_530 8 22 0.0000000180917
Sequoiadendron giganteum chr2 3 CH_sgi_672 7 18 0.000000314303
Solanum tuberosum ST4.03ch09 3 CH_stu_403 6 27 0.0000668898
Theobroma cacao Chromosome_1 3 CH_tca_303 4 5 0.000139271
Tarenaya hassleriana NW_010966459.1 3 CH_tha_82 6 16 0.0000176507
Trifolium pratense Tp57577_TGAC_v2_LG3 3 CH_tpr_192 4 5 0.0000497596
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_14 11 15 2.27413e-16
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_22 9 10 0.000000000000028418
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_253 4 4 0.0000930033
Vitis vinifera chr8 3 CH_vvi_202 6 13 0.00000500146
Vitis vinifera chr18_random 3 CH_vvi_69 13 56 0.00000000000277372
Vitis vinifera chr18 3 CH_vvi_88 9 19 0.0000000000833421
Acer truncatum chr3 4 CH_acertr_401 6 26 0.000225026
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 4 CH_amhyb_170 4 6 0.000283942
Brassica carinata ChrB08 4 CH_bca_511 4 4 0.0000419388
Camellia sinensis var. sinensis Chr9 4 CH_camsi_192 7 14 0.0000000106131
Camellia sinensis var. sinensis Chr4 4 CH_camsi_35 11 16 7.39157e-18
Camellia sinensis var. sinensis Chr10 4 CH_camsi_366 7 27 0.0000025974
Cannabis sativa NC_044375.1 4 CH_cansat_324 5 19 0.000534642
Capsicum annuum PGAv.1.6.scaffold203 4 CH_can_249 5 10 0.0000144669
Capsicum annuum PGAv.1.6.scaffold21 4 CH_can_277 4 5 0.0000624659
Corylus avellana 7 4 CH_cav_16 14 19 4.25267e-23
Coffea canephora chr10 4 CH_ccan_38 6 30 0.000000000425161
Carpinus fangiana Cfa07 4 CH_cfa_26 10 15 0.00000000000000439676
Citrullus lanatus CG_Chr03 4 CH_cla_147 4 6 0.00047698
Cucumis sativus L. chr4 4 CH_csa_130 5 7 0.00000293742
Davidia involucrata GWHABJS00000002 4 CH_din_128 6 10 0.000000286664
Davidia involucrata GWHABJS00000016 4 CH_din_305 4 5 0.000215909
Davidia involucrata GWHABJS00000011 4 CH_din_53 9 18 0.0000000000113713
Durio zibethinus NW_019167949.1 4 CH_dzi_195 4 4 0.0000395998
Eucalyptus grandis Chr06 4 CH_egr_301 7 8 0.000000000155175
Eucalyptus grandis Chr09 4 CH_egr_454 8 26 0.000000179145
Eucalyptus grandis Chr02 4 CH_egr_498 6 10 0.0000006109
Fragaria x ananassa Fvb2-3 4 CH_fan_126 6 8 0.0000000353302
Gossypium hirsutum D13 4 CH_ghi_116 7 7 0.0000000000274357
Gossypium hirsutum A13 4 CH_ghi_176 6 6 0.00000000442857
Gossypium hirsutum D05 4 CH_ghi_49 10 10 6.43995e-18
Gossypium hirsutum A04 4 CH_ghi_626 4 5 0.000570385
Gossypium hirsutum A06 4 CH_ghi_627 4 5 0.000570385
Gossypium hirsutum D06 4 CH_ghi_628 4 5 0.000570385
Gossypium hirsutum A05 4 CH_ghi_80 11 24 0.0000000000000917465
Glycine max Gm08 4 CH_gma_183 5 5 0.000000315224
Gossypium raimondii Chr13 4 CH_gra_137 5 5 0.000000465152
Gossypium raimondii Chr09 4 CH_gra_141 6 10 0.000000622236
Gossypium raimondii Chr09 4 CH_gra_16 12 13 2.74457e-21
Gossypium raimondii Chr10 4 CH_gra_308 4 5 0.000353695
Helianthus annuus HanXRQChr12 4 CH_han_166 6 6 0.00000000078503
Lupinus albus Lalb_Chr19 4 CH_lal_392 4 6 0.000694294
Lotus japonicus chr5 4 CH_lja_108 5 5 0.000000238942
Lonicera japonica GWHAAZE00000004 4 CH_lonja_127 7 7 0.0000000000064437
Lonicera japonica GWHAAZE00000007 4 CH_lonja_144 7 8 0.0000000000512968
Lonicera japonica GWHAAZE00000008 4 CH_lonja_284 5 6 0.0000012204
Malus domestica Chr10 4 CH_mdo_224 5 5 0.000000188918
Malus domestica Chr03 4 CH_mdo_397 4 4 0.0000370377
Manihot esculenta Chromosome08 4 CH_mes_220 7 24 0.00000430171
Medicago truncatula chr3 4 CH_mtr_117 7 8 0.00000000000301265
Nelumbo nucifera chr4 4 CH_nnu_106 5 6 0.00000044775
Olea europaea scaffold1252 4 CH_oeu_196 4 5 0.000114548
Olea europaea chr14 4 CH_oeu_82 5 6 0.00000067499
Papaver somniferum NC_039363.1 4 CH_pso_377 4 4 0.0000115013
Papaver somniferum NC_039358.1 4 CH_pso_378 4 4 0.0000115013
Quercus lobata CM012294 4 CH_qlo_846 4 5 0.000177931
Quercus lobata 1 4 CH_qlo_921 5 14 0.000374145
Rosa chinensis RcHm_v2.0_Chr1 4 CH_rch_284 9 60 0.000000164638
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_776 7 71 0.000916306
Rhododendron simsii chr05 4 CH_rsi_129 7 9 0.0000000002368
Rhododendron simsii chr10 4 CH_rsi_70 9 11 0.0000000000000114713
Salvia bowleyana GWHASIU00000001 4 CH_sbo_465 5 18 0.000586168
Salvia bowleyana GWHASIU00000002 4 CH_sbo_54 10 16 8.03423e-16
Salix brachista GWHAAZH00000005 4 CH_sbr_225 4 4 0.0000495457
Salix brachista GWHAAZH00000019 4 CH_sbr_330 7 45 0.000431582
Salix brachista GWHAAZH00000006 4 CH_sbr_77 6 6 0.00000000189949
Sequoiadendron giganteum chr3 4 CH_sgi_1014 4 4 0.0000516453
Sequoiadendron giganteum chr2 4 CH_sgi_112 12 14 6.03721e-21
Sequoiadendron giganteum chr1 4 CH_sgi_1190 4 5 0.000257002
Sequoiadendron giganteum chr5 4 CH_sgi_298 8 10 0.00000000000270958
Sequoiadendron giganteum chr10 4 CH_sgi_446 6 6 0.00000000178733
Sequoiadendron giganteum chr2 4 CH_sgi_530 8 22 0.0000000180917
Sequoiadendron giganteum chr2 4 CH_sgi_672 7 18 0.000000314303
Solanum tuberosum ST4.03ch09 4 CH_stu_403 6 27 0.0000668898
Theobroma cacao Chromosome_1 4 CH_tca_303 4 5 0.000139271
Tarenaya hassleriana NW_010966459.1 4 CH_tha_82 6 16 0.0000176507
Trifolium pratense Tp57577_TGAC_v2_LG3 4 CH_tpr_192 4 5 0.0000497596
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_14 11 15 2.27413e-16
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_22 9 10 0.000000000000028418
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_253 4 4 0.0000930033
Vitis vinifera chr8 4 CH_vvi_202 6 13 0.00000500146
Vitis vinifera chr18_random 4 CH_vvi_69 13 56 0.00000000000277372
Vitis vinifera chr18 4 CH_vvi_88 9 19 0.0000000000833421

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001