Functional clusters

Information

  • Type Gene Ontology
  • Description sequence-specific DNA binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 3 CH_aar_53 9 12 0.00000000251777
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 3 CH_amhyb_119 5 6 0.000118799
Arabidopsis thaliana Chr5 3 CH_ath_281 11 60 0.000007991
Carpinus fangiana Cfa03 3 CH_cfa_342 4 4 0.000948096
Durio zibethinus NW_019167827.1 3 CH_dzi_160 11 40 0.00000542202
Eucalyptus grandis Chr03 3 CH_egr_166 14 24 0.00000000000000115917
Fragaria vesca Fvb6 3 CH_fve_310 5 7 0.000202399
Oryza sativa ssp. japonica chr12 3 CH_osa_414 5 6 0.00045595
Pisum sativum chr4LG4 3 CH_psa_300 5 7 0.000250166
Papaver somniferum NC_039368.1 3 CH_pso_44 12 16 5.72749e-17
Quercus lobata CM012294 3 CH_qlo_747 5 6 0.0000631128
Sequoiadendron giganteum chr3 3 CH_sgi_205 12 20 0.00000000000000895284
Sequoiadendron giganteum chr5 3 CH_sgi_227 12 22 0.0000000000000450796
Sequoiadendron giganteum chr10 3 CH_sgi_239 11 17 0.0000000000000862195
Sequoiadendron giganteum chr7 3 CH_sgi_434 8 11 0.00000000103704
Sequoiadendron giganteum chr3 3 CH_sgi_573 6 6 0.0000000585038
Solanum lycopersicum SL4.0ch02 3 CH_sly_398 6 8 0.00015987
Zea mays 4 3 CH_zma_339 5 5 0.000769935
Aethionema arabicum LG-4 4 CH_aar_53 9 12 0.00000000251777
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 4 CH_amhyb_119 5 6 0.000118799
Arabidopsis thaliana Chr5 4 CH_ath_281 11 60 0.000007991
Carpinus fangiana Cfa03 4 CH_cfa_342 4 4 0.000948096
Durio zibethinus NW_019167827.1 4 CH_dzi_160 11 40 0.00000542202
Eucalyptus grandis Chr03 4 CH_egr_166 14 24 0.00000000000000115917
Fragaria vesca Fvb6 4 CH_fve_310 5 7 0.000202399
Oryza sativa ssp. japonica chr12 4 CH_osa_414 5 6 0.00045595
Pisum sativum chr4LG4 4 CH_psa_300 5 7 0.000250166
Papaver somniferum NC_039368.1 4 CH_pso_44 12 16 5.72749e-17
Quercus lobata CM012294 4 CH_qlo_747 5 6 0.0000631128
Sequoiadendron giganteum chr3 4 CH_sgi_205 12 20 0.00000000000000895284
Sequoiadendron giganteum chr5 4 CH_sgi_227 12 22 0.0000000000000450796
Sequoiadendron giganteum chr10 4 CH_sgi_239 11 17 0.0000000000000862195
Sequoiadendron giganteum chr7 4 CH_sgi_434 8 11 0.00000000103704
Sequoiadendron giganteum chr3 4 CH_sgi_573 6 6 0.0000000585038
Solanum lycopersicum SL4.0ch02 4 CH_sly_398 6 8 0.00015987
Zea mays 4 4 CH_zma_339 5 5 0.000769935

Available child term results

Ontology identifier Description Number of clusters
GO:0000976 transcription cis-regulatory region binding 6
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 44
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 12
GO:0000987 cis-regulatory region sequence-specific DNA binding 20
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding 4
GO:0003688 DNA replication origin binding 4
GO:0003691 double-stranded telomeric DNA binding 14
GO:0019237 centromeric DNA binding 8
GO:0032422 purine-rich negative regulatory element binding 12
GO:0043047 single-stranded telomeric DNA binding 8
GO:0070888 E-box binding 38
GO:0080084 5S rDNA binding 8
GO:1990837 sequence-specific double-stranded DNA binding 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001