Functional clusters
Information
- Type Gene Ontology
- Description sequence-specific DNA binding
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aethionema arabicum | LG-4 | 3 | CH_aar_53 | 9 | 12 | 0.00000000251777 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 3 | CH_amhyb_119 | 5 | 6 | 0.000118799 |
Arabidopsis thaliana | Chr5 | 3 | CH_ath_281 | 11 | 60 | 0.000007991 |
Carpinus fangiana | Cfa03 | 3 | CH_cfa_342 | 4 | 4 | 0.000948096 |
Durio zibethinus | NW_019167827.1 | 3 | CH_dzi_160 | 11 | 40 | 0.00000542202 |
Eucalyptus grandis | Chr03 | 3 | CH_egr_166 | 14 | 24 | 0.00000000000000115917 |
Fragaria vesca | Fvb6 | 3 | CH_fve_310 | 5 | 7 | 0.000202399 |
Oryza sativa ssp. japonica | chr12 | 3 | CH_osa_414 | 5 | 6 | 0.00045595 |
Pisum sativum | chr4LG4 | 3 | CH_psa_300 | 5 | 7 | 0.000250166 |
Papaver somniferum | NC_039368.1 | 3 | CH_pso_44 | 12 | 16 | 5.72749e-17 |
Quercus lobata | CM012294 | 3 | CH_qlo_747 | 5 | 6 | 0.0000631128 |
Sequoiadendron giganteum | chr3 | 3 | CH_sgi_205 | 12 | 20 | 0.00000000000000895284 |
Sequoiadendron giganteum | chr5 | 3 | CH_sgi_227 | 12 | 22 | 0.0000000000000450796 |
Sequoiadendron giganteum | chr10 | 3 | CH_sgi_239 | 11 | 17 | 0.0000000000000862195 |
Sequoiadendron giganteum | chr7 | 3 | CH_sgi_434 | 8 | 11 | 0.00000000103704 |
Sequoiadendron giganteum | chr3 | 3 | CH_sgi_573 | 6 | 6 | 0.0000000585038 |
Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_398 | 6 | 8 | 0.00015987 |
Zea mays | 4 | 3 | CH_zma_339 | 5 | 5 | 0.000769935 |
Aethionema arabicum | LG-4 | 4 | CH_aar_53 | 9 | 12 | 0.00000000251777 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 4 | CH_amhyb_119 | 5 | 6 | 0.000118799 |
Arabidopsis thaliana | Chr5 | 4 | CH_ath_281 | 11 | 60 | 0.000007991 |
Carpinus fangiana | Cfa03 | 4 | CH_cfa_342 | 4 | 4 | 0.000948096 |
Durio zibethinus | NW_019167827.1 | 4 | CH_dzi_160 | 11 | 40 | 0.00000542202 |
Eucalyptus grandis | Chr03 | 4 | CH_egr_166 | 14 | 24 | 0.00000000000000115917 |
Fragaria vesca | Fvb6 | 4 | CH_fve_310 | 5 | 7 | 0.000202399 |
Oryza sativa ssp. japonica | chr12 | 4 | CH_osa_414 | 5 | 6 | 0.00045595 |
Pisum sativum | chr4LG4 | 4 | CH_psa_300 | 5 | 7 | 0.000250166 |
Papaver somniferum | NC_039368.1 | 4 | CH_pso_44 | 12 | 16 | 5.72749e-17 |
Quercus lobata | CM012294 | 4 | CH_qlo_747 | 5 | 6 | 0.0000631128 |
Sequoiadendron giganteum | chr3 | 4 | CH_sgi_205 | 12 | 20 | 0.00000000000000895284 |
Sequoiadendron giganteum | chr5 | 4 | CH_sgi_227 | 12 | 22 | 0.0000000000000450796 |
Sequoiadendron giganteum | chr10 | 4 | CH_sgi_239 | 11 | 17 | 0.0000000000000862195 |
Sequoiadendron giganteum | chr7 | 4 | CH_sgi_434 | 8 | 11 | 0.00000000103704 |
Sequoiadendron giganteum | chr3 | 4 | CH_sgi_573 | 6 | 6 | 0.0000000585038 |
Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_398 | 6 | 8 | 0.00015987 |
Zea mays | 4 | 4 | CH_zma_339 | 5 | 5 | 0.000769935 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000976 | transcription cis-regulatory region binding | 6 |
GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 44 |
GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 12 |
GO:0000987 | cis-regulatory region sequence-specific DNA binding | 20 |
GO:0001164 | RNA polymerase I core promoter sequence-specific DNA binding | 4 |
GO:0003688 | DNA replication origin binding | 4 |
GO:0003691 | double-stranded telomeric DNA binding | 14 |
GO:0019237 | centromeric DNA binding | 8 |
GO:0032422 | purine-rich negative regulatory element binding | 12 |
GO:0043047 | single-stranded telomeric DNA binding | 8 |
GO:0070888 | E-box binding | 38 |
GO:0080084 | 5S rDNA binding | 8 |
GO:1990837 | sequence-specific double-stranded DNA binding | 2 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |