Functional clusters
Information
- Type Gene Ontology
- Description ribonucleoside binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 3 | CH_aag_55 | 5 | 46 | 0.000000195166 |
| Acer truncatum | chr12 | 3 | CH_acertr_177 | 5 | 46 | 0.000000752468 |
| Acer truncatum | chr2 | 3 | CH_acertr_423 | 3 | 10 | 0.00040604 |
| Aquilegia oxysepala | CHR02 | 3 | CH_aox_105 | 3 | 3 | 0.00000159195 |
| Amborella trichopoda | AmTr_v1.0_scaffold00020 | 3 | CH_atr_182 | 3 | 6 | 0.0000540942 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 3 | CH_atr_63 | 4 | 4 | 0.0000000010755 |
| Brassica oleracea | C5 | 3 | CH_bol_146 | 5 | 33 | 0.000000476923 |
| Brassica oleracea | C4 | 3 | CH_bol_47 | 6 | 16 | 0.00000000000741741 |
| Cannabis sativa | NC_044374.1 | 3 | CH_cansat_348 | 2 | 2 | 0.000656642 |
| Capsicum annuum | PGAv.1.6.scaffold960 | 3 | CH_can_7 | 15 | 33 | 8.78702e-33 |
| Carica papaya | supercontig_17 | 3 | CH_cpa_80 | 3 | 3 | 0.000000474494 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_272 | 2 | 2 | 0.000761499 |
| Fragaria x ananassa | Fvb5-4 | 3 | CH_fan_214 | 3 | 3 | 0.00000187662 |
| Fragaria x ananassa | Fvb3-3 | 3 | CH_fan_215 | 3 | 3 | 0.00000187662 |
| Lonicera japonica | GWHAAZE00000003 | 3 | CH_lonja_329 | 3 | 4 | 0.00000783099 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_250 | 3 | 3 | 0.00000384029 |
| Micromonas commoda | Chr_01 | 3 | CH_mco_4 | 3 | 3 | 0.000000587887 |
| Quercus lobata | 5 | 3 | CH_qlo_238 | 6 | 40 | 0.0000000000291101 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_77 | 6 | 9 | 9.52136e-16 |
| Salix brachista | GWHAAZH00000011 | 3 | CH_sbr_180 | 3 | 6 | 0.00000416785 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_184 | 7 | 12 | 0.00000000000000129834 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_560 | 4 | 5 | 0.0000000411694 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_863 | 3 | 3 | 0.0000130076 |
| Selenicereus undatus | Scaffold_33677 | 3 | CH_sun_179 | 3 | 10 | 0.000431352 |
| Theobroma cacao | Chromosome_2 | 3 | CH_tca_197 | 3 | 4 | 0.00000270296 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_267 | 3 | CH_tpr_136 | 3 | 4 | 0.00000412485 |
| Utricularia gibba | unitig_8 | 3 | CH_ugi_28 | 3 | 3 | 0.000000353437 |
| Vitis vinifera | chr13 | 3 | CH_vvi_426 | 3 | 32 | 0.000857844 |
| Anthoceros agrestis | Sc2ySwM_344 | 4 | CH_aag_55 | 5 | 46 | 0.000000195166 |
| Acer truncatum | chr12 | 4 | CH_acertr_177 | 5 | 46 | 0.000000752468 |
| Acer truncatum | chr2 | 4 | CH_acertr_423 | 3 | 10 | 0.00040604 |
| Aquilegia oxysepala | CHR02 | 4 | CH_aox_105 | 3 | 3 | 0.00000159195 |
| Amborella trichopoda | AmTr_v1.0_scaffold00020 | 4 | CH_atr_182 | 3 | 6 | 0.0000540942 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 4 | CH_atr_63 | 4 | 4 | 0.0000000010755 |
| Brassica oleracea | C5 | 4 | CH_bol_146 | 5 | 33 | 0.000000476923 |
| Brassica oleracea | C4 | 4 | CH_bol_47 | 6 | 16 | 0.00000000000741741 |
| Cannabis sativa | NC_044374.1 | 4 | CH_cansat_348 | 2 | 2 | 0.000656642 |
| Capsicum annuum | PGAv.1.6.scaffold960 | 4 | CH_can_7 | 15 | 33 | 8.78702e-33 |
| Carica papaya | supercontig_17 | 4 | CH_cpa_80 | 3 | 3 | 0.000000474494 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_272 | 2 | 2 | 0.000761499 |
| Fragaria x ananassa | Fvb5-4 | 4 | CH_fan_214 | 3 | 3 | 0.00000187662 |
| Fragaria x ananassa | Fvb3-3 | 4 | CH_fan_215 | 3 | 3 | 0.00000187662 |
| Lonicera japonica | GWHAAZE00000003 | 4 | CH_lonja_329 | 3 | 4 | 0.00000783099 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_250 | 3 | 3 | 0.00000384029 |
| Micromonas commoda | Chr_01 | 4 | CH_mco_4 | 3 | 3 | 0.000000587887 |
| Quercus lobata | 5 | 4 | CH_qlo_238 | 6 | 40 | 0.0000000000291101 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_77 | 6 | 9 | 9.52136e-16 |
| Salix brachista | GWHAAZH00000011 | 4 | CH_sbr_180 | 3 | 6 | 0.00000416785 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_184 | 7 | 12 | 0.00000000000000129834 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_560 | 4 | 5 | 0.0000000411694 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_863 | 3 | 3 | 0.0000130076 |
| Selenicereus undatus | Scaffold_33677 | 4 | CH_sun_179 | 3 | 10 | 0.000431352 |
| Theobroma cacao | Chromosome_2 | 4 | CH_tca_197 | 3 | 4 | 0.00000270296 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_267 | 4 | CH_tpr_136 | 3 | 4 | 0.00000412485 |
| Utricularia gibba | unitig_8 | 4 | CH_ugi_28 | 3 | 3 | 0.000000353437 |
| Vitis vinifera | chr13 | 4 | CH_vvi_426 | 3 | 32 | 0.000857844 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |