Functional clusters
Information
- Type Gene Ontology
- Description thiamine pyrophosphate binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr10 | 3 | CH_camsi_612 | 3 | 10 | 0.000137565 |
| Chara braunii | BFEA01000205 | 3 | CH_cbr_94 | 3 | 6 | 0.0000564401 |
| Citrus clementina | scaffold_6 | 3 | CH_ccl_273 | 3 | 7 | 0.0000332817 |
| Carya illinoinensis | Chr10 | 3 | CH_cil_267 | 3 | 4 | 0.00000507021 |
| Citrullus lanatus | CG_Chr04 | 3 | CH_cla_25 | 4 | 4 | 0.0000000014977 |
| Cucumis melo | chr08 | 3 | CH_cme_115 | 3 | 3 | 0.0000011015 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3086 | 3 | CH_cqu_244 | 3 | 3 | 0.00000447901 |
| Cucumis sativus L. | chr4 | 3 | CH_csa_126 | 3 | 3 | 0.00000172471 |
| Davidia involucrata | GWHABJS00000012 | 3 | CH_din_224 | 4 | 31 | 0.0000358394 |
| Eucalyptus grandis | Chr01 | 3 | CH_egr_339 | 4 | 4 | 0.00000000109474 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_556 | 3 | 3 | 0.00000287747 |
| Gossypium hirsutum | A02 | 3 | CH_ghi_310 | 3 | 3 | 0.00000312821 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 3 | CH_lsa_141 | 4 | 5 | 0.00000000986667 |
| Malus domestica | Chr12 | 3 | CH_mdo_558 | 3 | 9 | 0.00024059 |
| Nelumbo nucifera | chr5 | 3 | CH_nnu_140 | 3 | 3 | 0.00000396763 |
| Nelumbo nucifera | chr2 | 3 | CH_nnu_145 | 4 | 19 | 0.00000626543 |
| Oryza sativa ssp. japonica | chr04 | 3 | CH_osa_259 | 3 | 6 | 0.0000304358 |
| Quercus lobata | 3 | 3 | CH_qlo_530 | 3 | 3 | 0.00000145542 |
| Rhododendron simsii | chr10 | 3 | CH_rsi_51 | 9 | 28 | 5.96334e-18 |
| Theobroma cacao | Chromosome_5 | 3 | CH_tca_104 | 4 | 5 | 0.00000000194432 |
| Vitis vinifera | chr16 | 3 | CH_vvi_87 | 5 | 8 | 0.0000000000613508 |
| Camellia sinensis var. sinensis | Chr10 | 4 | CH_camsi_612 | 3 | 10 | 0.000137565 |
| Chara braunii | BFEA01000205 | 4 | CH_cbr_94 | 3 | 6 | 0.0000564401 |
| Citrus clementina | scaffold_6 | 4 | CH_ccl_273 | 3 | 7 | 0.0000332817 |
| Carya illinoinensis | Chr10 | 4 | CH_cil_267 | 3 | 4 | 0.00000507021 |
| Citrullus lanatus | CG_Chr04 | 4 | CH_cla_25 | 4 | 4 | 0.0000000014977 |
| Cucumis melo | chr08 | 4 | CH_cme_115 | 3 | 3 | 0.0000011015 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3086 | 4 | CH_cqu_244 | 3 | 3 | 0.00000447901 |
| Cucumis sativus L. | chr4 | 4 | CH_csa_126 | 3 | 3 | 0.00000172471 |
| Davidia involucrata | GWHABJS00000012 | 4 | CH_din_224 | 4 | 31 | 0.0000358394 |
| Eucalyptus grandis | Chr01 | 4 | CH_egr_339 | 4 | 4 | 0.00000000109474 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_556 | 3 | 3 | 0.00000287747 |
| Gossypium hirsutum | A02 | 4 | CH_ghi_310 | 3 | 3 | 0.00000312821 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 4 | CH_lsa_141 | 4 | 5 | 0.00000000986667 |
| Malus domestica | Chr12 | 4 | CH_mdo_558 | 3 | 9 | 0.00024059 |
| Nelumbo nucifera | chr5 | 4 | CH_nnu_140 | 3 | 3 | 0.00000396763 |
| Nelumbo nucifera | chr2 | 4 | CH_nnu_145 | 4 | 19 | 0.00000626543 |
| Oryza sativa ssp. japonica | chr04 | 4 | CH_osa_259 | 3 | 6 | 0.0000304358 |
| Quercus lobata | 3 | 4 | CH_qlo_530 | 3 | 3 | 0.00000145542 |
| Rhododendron simsii | chr10 | 4 | CH_rsi_51 | 9 | 28 | 5.96334e-18 |
| Theobroma cacao | Chromosome_5 | 4 | CH_tca_104 | 4 | 5 | 0.00000000194432 |
| Vitis vinifera | chr16 | 4 | CH_vvi_87 | 5 | 8 | 0.0000000000613508 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |