Functional clusters

Information

  • Type Gene Ontology
  • Description heme binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR01 3 CH_aox_38 15 58 0.000000000852319
Aquilegia oxysepala CHR01 3 CH_aox_90 13 59 0.000000409547
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 3 CH_arhy_276 11 39 0.000000152084
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 3 CH_arhy_314 11 44 0.000000655516
Brassica napus C01 3 CH_bna_189 9 23 0.000000144869
Brassica oleracea C1 3 CH_bol_85 9 20 0.00000000974522
Camellia sinensis var. sinensis Chr11 3 CH_camsi_111 8 8 0.0000000000261226
Coffea canephora chr0 3 CH_ccan_9 11 63 0.0000000000000254539
Citrus clementina scaffold_2 3 CH_ccl_199 13 60 0.000000607904
Cardamine hirsuta Chr8 3 CH_chi_396 4 4 0.000930795
Carya illinoinensis Chr14 3 CH_cil_274 12 64 0.00000649617
Cucumis melo chr04 3 CH_cme_251 5 8 0.000459938
Chenopodium quinoa C_Quinoa_Scaffold_1000 3 CH_cqu_132 7 7 0.0000000261423
Chenopodium quinoa C_Quinoa_Scaffold_1995 3 CH_cqu_165 8 12 0.000000217658
Capsella rubella scaffold_7 3 CH_cru_40 12 25 0.00000000000292983
Daucus carota DCARv2_Chr1 3 CH_dca_75 12 36 0.00000000308501
Fragaria x ananassa Fvb3-4 3 CH_fan_165 6 6 0.000000300249
Fragaria vesca Fvb3 3 CH_fve_154 7 11 0.000000668311
Glycine max Gm15 3 CH_gma_490 6 14 0.000626556
Glycine max Gm09 3 CH_gma_96 8 10 0.00000000161294
Helianthus annuus HanXRQChr08 3 CH_han_606 9 35 0.000283077
Helianthus annuus HanXRQChr11 3 CH_han_612 8 25 0.000295758
Helianthus annuus HanXRQChr16 3 CH_han_67 16 37 0.0000000000000207294
Hydrangea macrophylla Hma1.2p1_0170F.1 3 CH_hma_90 6 8 0.00000162201
Lonicera japonica GWHAAZE00000005 3 CH_lonja_166 11 20 0.00000000080215
Lactuca sativa Lsat_1_v8_lg_6 3 CH_lsa_355 6 10 0.000127249
Medicago truncatula chr6 3 CH_mtr_215 13 52 0.00000000444751
Oryza sativa ssp. japonica chr03 3 CH_osa_107 11 30 0.00000000785294
Punica granatum NC_045129.1 3 CH_pgr_231 6 9 0.0000240698
Pisum sativum chr5LG3 3 CH_psa_159 6 10 0.00000720635
Papaver somniferum NC_039365.1 3 CH_pso_205 14 79 0.0000000138318
Papaver somniferum NC_039360.1 3 CH_pso_209 8 13 0.0000000183534
Phaseolus vulgaris Chr06 3 CH_pvu_138 13 65 0.000000396318
Phaseolus vulgaris Chr10 3 CH_pvu_258 10 49 0.0000746593
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_246 7 8 0.0000000267788
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_417 6 8 0.00000708827
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_453 7 15 0.0000198737
Salvia bowleyana GWHASIU00000008 3 CH_sbo_26 24 74 6.04478e-24
Sequoiadendron giganteum chr9 3 CH_sgi_1039 6 7 0.0000807239
Sequoiadendron giganteum chr2 3 CH_sgi_307 10 10 0.00000000000503838
Sequoiadendron giganteum chr7 3 CH_sgi_710 9 15 0.00000085903
Sapria himalayana scaffold5_19632047 3 CH_shi_175 6 51 0.0000796759
Solanum lycopersicum SL4.0ch04 3 CH_sly_266 7 12 0.00000691263
Solanum pennellii Spenn-ch04 3 CH_spe_62 9 13 0.0000000000893996
Solanum tuberosum ST4.03ch04 3 CH_stu_162 10 19 0.00000000614559
Solanum tuberosum ST4.03ch04 3 CH_stu_348 8 20 0.0000282855
Selenicereus undatus Scaffold_33676 3 CH_sun_60 5 5 0.00000305318
Trifolium pratense Tp57577_TGAC_v2_LG4 3 CH_tpr_143 13 74 0.0000062356
Tripterygium wilfordii NC_052235.1 3 CH_twi_262 6 12 0.000222966
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_119 7 9 0.000000321429
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_355 9 41 0.000564168
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_40 13 29 0.0000000000109428
Vanilla planifolia CM028150.1 3 CH_vpl_276 7 24 0.000233026
Zea mays 1 3 CH_zma_168 8 21 0.0000135906
Aquilegia oxysepala CHR01 4 CH_aox_38 15 58 0.000000000852319
Aquilegia oxysepala CHR01 4 CH_aox_90 13 59 0.000000409547
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 4 CH_arhy_276 11 39 0.000000152084
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 4 CH_arhy_314 11 44 0.000000655516
Brassica napus C01 4 CH_bna_189 9 23 0.000000144869
Brassica oleracea C1 4 CH_bol_85 9 20 0.00000000974522
Camellia sinensis var. sinensis Chr11 4 CH_camsi_111 8 8 0.0000000000261226
Coffea canephora chr0 4 CH_ccan_9 11 63 0.0000000000000254539
Citrus clementina scaffold_2 4 CH_ccl_199 13 60 0.000000607904
Cardamine hirsuta Chr8 4 CH_chi_396 4 4 0.000930795
Carya illinoinensis Chr14 4 CH_cil_274 12 64 0.00000649617
Cucumis melo chr04 4 CH_cme_251 5 8 0.000459938
Chenopodium quinoa C_Quinoa_Scaffold_1000 4 CH_cqu_132 7 7 0.0000000261423
Chenopodium quinoa C_Quinoa_Scaffold_1995 4 CH_cqu_165 8 12 0.000000217658
Capsella rubella scaffold_7 4 CH_cru_40 12 25 0.00000000000292983
Daucus carota DCARv2_Chr1 4 CH_dca_75 12 36 0.00000000308501
Fragaria x ananassa Fvb3-4 4 CH_fan_165 6 6 0.000000300249
Fragaria vesca Fvb3 4 CH_fve_154 7 11 0.000000668311
Glycine max Gm15 4 CH_gma_490 6 14 0.000626556
Glycine max Gm09 4 CH_gma_96 8 10 0.00000000161294
Helianthus annuus HanXRQChr08 4 CH_han_606 9 35 0.000283077
Helianthus annuus HanXRQChr11 4 CH_han_612 8 25 0.000295758
Helianthus annuus HanXRQChr16 4 CH_han_67 16 37 0.0000000000000207294
Hydrangea macrophylla Hma1.2p1_0170F.1 4 CH_hma_90 6 8 0.00000162201
Lonicera japonica GWHAAZE00000005 4 CH_lonja_166 11 20 0.00000000080215
Lactuca sativa Lsat_1_v8_lg_6 4 CH_lsa_355 6 10 0.000127249
Medicago truncatula chr6 4 CH_mtr_215 13 52 0.00000000444751
Oryza sativa ssp. japonica chr03 4 CH_osa_107 11 30 0.00000000785294
Punica granatum NC_045129.1 4 CH_pgr_231 6 9 0.0000240698
Pisum sativum chr5LG3 4 CH_psa_159 6 10 0.00000720635
Papaver somniferum NC_039365.1 4 CH_pso_205 14 79 0.0000000138318
Papaver somniferum NC_039360.1 4 CH_pso_209 8 13 0.0000000183534
Phaseolus vulgaris Chr06 4 CH_pvu_138 13 65 0.000000396318
Phaseolus vulgaris Chr10 4 CH_pvu_258 10 49 0.0000746593
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_246 7 8 0.0000000267788
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_417 6 8 0.00000708827
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_453 7 15 0.0000198737
Salvia bowleyana GWHASIU00000008 4 CH_sbo_26 24 74 6.04478e-24
Sequoiadendron giganteum chr9 4 CH_sgi_1039 6 7 0.0000807239
Sequoiadendron giganteum chr2 4 CH_sgi_307 10 10 0.00000000000503838
Sequoiadendron giganteum chr7 4 CH_sgi_710 9 15 0.00000085903
Sapria himalayana scaffold5_19632047 4 CH_shi_175 6 51 0.0000796759
Solanum lycopersicum SL4.0ch04 4 CH_sly_266 7 12 0.00000691263
Solanum pennellii Spenn-ch04 4 CH_spe_62 9 13 0.0000000000893996
Solanum tuberosum ST4.03ch04 4 CH_stu_162 10 19 0.00000000614559
Solanum tuberosum ST4.03ch04 4 CH_stu_348 8 20 0.0000282855
Selenicereus undatus Scaffold_33676 4 CH_sun_60 5 5 0.00000305318
Trifolium pratense Tp57577_TGAC_v2_LG4 4 CH_tpr_143 13 74 0.0000062356
Tripterygium wilfordii NC_052235.1 4 CH_twi_262 6 12 0.000222966
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_119 7 9 0.000000321429
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_355 9 41 0.000564168
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_40 13 29 0.0000000000109428
Vanilla planifolia CM028150.1 4 CH_vpl_276 7 24 0.000233026
Zea mays 1 4 CH_zma_168 8 21 0.0000135906

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001