Functional clusters
Information
- Type Gene Ontology
- Description sequence-specific double-stranded DNA binding
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_367 | 4 | 8 | 0.00000216526 |
Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_367 | 4 | 8 | 0.00000216526 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000976 | transcription cis-regulatory region binding | 6 |
GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 44 |
GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 12 |
GO:0000987 | cis-regulatory region sequence-specific DNA binding | 20 |
GO:0001164 | RNA polymerase I core promoter sequence-specific DNA binding | 4 |
GO:0003688 | DNA replication origin binding | 4 |
GO:0019237 | centromeric DNA binding | 8 |
GO:0032422 | purine-rich negative regulatory element binding | 12 |
GO:0070888 | E-box binding | 38 |
GO:0080084 | 5S rDNA binding | 8 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |