Functional clusters

Information

  • Type Gene Ontology
  • Description sequence-specific double-stranded DNA binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Rosa chinensis RcHm_v2.0_Chr7 3 CH_rch_367 4 8 0.00000216526
Rosa chinensis RcHm_v2.0_Chr7 4 CH_rch_367 4 8 0.00000216526

Available child term results

Ontology identifier Description Number of clusters
GO:0000976 transcription cis-regulatory region binding 6
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 44
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 12
GO:0000987 cis-regulatory region sequence-specific DNA binding 20
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding 4
GO:0003688 DNA replication origin binding 4
GO:0019237 centromeric DNA binding 8
GO:0032422 purine-rich negative regulatory element binding 12
GO:0070888 E-box binding 38
GO:0080084 5S rDNA binding 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001