Functional clusters

Information

  • Type Gene Ontology
  • Description ion binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 3 CH_acertr_240 26 51 0.00000979594
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 3 CH_arhy_412 13 14 0.0000136886
Arabidopsis thaliana Chr3 3 CH_ath_429 15 26 0.0000905192
Arabidopsis thaliana Chr3 3 CH_ath_451 22 55 0.000128733
Cannabis sativa NC_044378.1 3 CH_cansat_204 19 33 0.0000620569
Cicer arietinum L. Ca_LG7_v3 3 CH_car_61 29 57 0.00000612335
Coffea canephora chr5 3 CH_ccan_90 13 68 0.000000147814
Cucumis melo chr06 3 CH_cme_230 21 40 0.000390949
Chenopodium quinoa C_Quinoa_Scaffold_1000 3 CH_cqu_553 10 10 0.000946042
Cucumis sativus L. chr6 3 CH_csa_73 16 17 0.0000000071132
Eucalyptus grandis Chr09 3 CH_egr_606 23 33 0.0000134126
Erythranthe guttata scaffold_17 3 CH_egut_387 21 36 0.000465063
Fragaria x ananassa Fvb3-2 3 CH_fan_425 26 57 0.000207033
Fragaria x ananassa Fvb3-1 3 CH_fan_67 29 45 0.000000000177201
Gossypium hirsutum A01 3 CH_ghi_393 29 56 0.0000307315
Gossypium hirsutum A04 3 CH_ghi_674 23 43 0.000876773
Gossypium raimondii Chr02 3 CH_gra_103 29 45 0.000000013888
Lotus japonicus chr6 3 CH_lja_192 30 59 0.0000289538
Lotus japonicus chr6 3 CH_lja_341 26 52 0.000587906
Lotus japonicus chr3 3 CH_lja_71 25 34 0.0000000068841
Lonicera japonica GWHAAZE00000002 3 CH_lonja_74 30 34 3.42799e-16
Malus domestica Chr10 3 CH_mdo_424 25 50 0.0000484902
Marchantia polymorpha scaffold_22 3 CH_mpo_79 9 9 0.0000966972
Medicago truncatula chr2 3 CH_mtr_469 19 31 0.0000390751
Prunus persica Pp08 3 CH_ppe_194 29 47 0.0000000923859
Pisum sativum chr5LG3 3 CH_psa_193 14 20 0.0000241208
Pisum sativum chr1LG6 3 CH_psa_261 27 73 0.000155814
Rhododendron simsii chr02 3 CH_rsi_336 12 13 0.0000568404
Sequoiadendron giganteum chr7 3 CH_sgi_1189 14 17 0.000253442
Sequoiadendron giganteum chr8 3 CH_sgi_768 29 50 0.00000253206
Solanum lycopersicum SL4.0ch07 3 CH_sly_152 30 45 0.0000000260748
Solanum tuberosum ST4.03ch07 3 CH_stu_138 30 44 0.000000000570692
Solanum tuberosum ST4.03ch01 3 CH_stu_167 24 32 0.00000000868169
Solanum tuberosum ST4.03ch07 3 CH_stu_309 22 34 0.00000919021
Solanum tuberosum ST4.03ch01 3 CH_stu_589 29 62 0.000536826
Selenicereus undatus Scaffold_33673 3 CH_sun_222 23 60 0.000671628
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_137 16 18 0.00000149414
Vitis vinifera chr1 3 CH_vvi_250 19 28 0.0000405568
Acer truncatum chr5 4 CH_acertr_240 26 51 0.00000979594
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 4 CH_arhy_412 13 14 0.0000136886
Arabidopsis thaliana Chr3 4 CH_ath_429 15 26 0.0000905192
Arabidopsis thaliana Chr3 4 CH_ath_451 22 55 0.000128733
Cannabis sativa NC_044378.1 4 CH_cansat_204 19 33 0.0000620569
Cicer arietinum L. Ca_LG7_v3 4 CH_car_61 29 57 0.00000612335
Coffea canephora chr5 4 CH_ccan_90 13 68 0.000000147814
Cucumis melo chr06 4 CH_cme_230 21 40 0.000390949
Chenopodium quinoa C_Quinoa_Scaffold_1000 4 CH_cqu_553 10 10 0.000946042
Cucumis sativus L. chr6 4 CH_csa_73 16 17 0.0000000071132
Eucalyptus grandis Chr09 4 CH_egr_606 23 33 0.0000134126
Erythranthe guttata scaffold_17 4 CH_egut_387 21 36 0.000465063
Fragaria x ananassa Fvb3-2 4 CH_fan_425 26 57 0.000207033
Fragaria x ananassa Fvb3-1 4 CH_fan_67 29 45 0.000000000177201
Gossypium hirsutum A01 4 CH_ghi_393 29 56 0.0000307315
Gossypium hirsutum A04 4 CH_ghi_674 23 43 0.000876773
Gossypium raimondii Chr02 4 CH_gra_103 29 45 0.000000013888
Lotus japonicus chr6 4 CH_lja_192 30 59 0.0000289538
Lotus japonicus chr6 4 CH_lja_341 26 52 0.000587906
Lotus japonicus chr3 4 CH_lja_71 25 34 0.0000000068841
Lonicera japonica GWHAAZE00000002 4 CH_lonja_74 30 34 3.42799e-16
Malus domestica Chr10 4 CH_mdo_424 25 50 0.0000484902
Marchantia polymorpha scaffold_22 4 CH_mpo_79 9 9 0.0000966972
Medicago truncatula chr2 4 CH_mtr_469 19 31 0.0000390751
Prunus persica Pp08 4 CH_ppe_194 29 47 0.0000000923859
Pisum sativum chr5LG3 4 CH_psa_193 14 20 0.0000241208
Pisum sativum chr1LG6 4 CH_psa_261 27 73 0.000155814
Rhododendron simsii chr02 4 CH_rsi_336 12 13 0.0000568404
Sequoiadendron giganteum chr7 4 CH_sgi_1189 14 17 0.000253442
Sequoiadendron giganteum chr8 4 CH_sgi_768 29 50 0.00000253206
Solanum lycopersicum SL4.0ch07 4 CH_sly_152 30 45 0.0000000260748
Solanum tuberosum ST4.03ch07 4 CH_stu_138 30 44 0.000000000570692
Solanum tuberosum ST4.03ch01 4 CH_stu_167 24 32 0.00000000868169
Solanum tuberosum ST4.03ch07 4 CH_stu_309 22 34 0.00000919021
Solanum tuberosum ST4.03ch01 4 CH_stu_589 29 62 0.000536826
Selenicereus undatus Scaffold_33673 4 CH_sun_222 23 60 0.000671628
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_137 16 18 0.00000149414
Vitis vinifera chr1 4 CH_vvi_250 19 28 0.0000405568

Available child term results

Ontology identifier Description Number of clusters
GO:0000287 magnesium ion binding 8
GO:0000822 inositol hexakisphosphate binding 2
GO:0005504 fatty acid binding 62
GO:0005506 iron ion binding 142
GO:0005507 copper ion binding 154
GO:0005509 calcium ion binding 176
GO:0005524 ATP binding 56
GO:0005525 GTP binding 14
GO:0005542 folic acid binding 88
GO:0008198 ferrous iron binding 34
GO:0008199 ferric iron binding 12
GO:0008270 zinc ion binding 74
GO:0010013 N-1-naphthylphthalamic acid binding 28
GO:0010181 FMN binding 84
GO:0010427 abscisic acid binding 174
GO:0016151 nickel cation binding 12
GO:0016208 AMP binding 2
GO:0019003 GDP binding 4
GO:0030145 manganese ion binding 476
GO:0030151 molybdenum ion binding 8
GO:0030170 pyridoxal phosphate binding 44
GO:0030955 potassium ion binding 18
GO:0030976 thiamine pyrophosphate binding 42
GO:0031210 phosphatidylcholine binding 4
GO:0031418 L-ascorbic acid binding 32
GO:0042301 phosphate ion binding 4
GO:0043168 anion binding 24
GO:0043169 cation binding 2
GO:0043295 glutathione binding 22
GO:0043531 ADP binding 1320
GO:0046870 cadmium ion binding 26
GO:0046872 metal ion binding 66
GO:0046914 transition metal ion binding 72
GO:0050660 flavin adenine dinucleotide binding 316
GO:0050897 cobalt ion binding 2
GO:0070300 phosphatidic acid binding 2
GO:0070401 NADP+ binding 18
GO:0070402 NADPH binding 2
GO:0070403 NAD+ binding 12
GO:0070406 glutamine binding 2
GO:0071949 FAD binding 174
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding 2
GO:1901149 salicylic acid binding 6
GO:1901612 cardiolipin binding 8
GO:2001227 quercitrin binding 22

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001