Functional clusters

Information

  • Type Gene Ontology
  • Description transition metal ion binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 3 CH_aag_62 16 29 0.000000641952
Anthoceros agrestis Sc2ySwM_228 3 CH_aag_93 14 27 0.0000343379
Aquilegia oxysepala CHR04 3 CH_aox_146 12 27 0.0000235114
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 3 CH_arhy_442 10 19 0.0000274192
Arabidopsis thaliana Chr4 3 CH_ath_166 8 11 0.000000201082
Carpinus fangiana Cfa01 3 CH_cfa_194 13 35 0.0000228351
Corchorus olitorius AWUE01018369.1 3 CH_col_120 5 5 0.000886671
Capsella rubella scaffold_6 3 CH_cru_112 9 10 0.0000000615773
Davidia involucrata GWHABJS00000017 3 CH_din_264 6 6 0.000125704
Eucalyptus grandis Chr02 3 CH_egr_346 10 10 0.00000000180395
Erythranthe guttata scaffold_8 3 CH_egut_156 14 26 0.0000000393753
Erythranthe guttata scaffold_13 3 CH_egut_423 12 35 0.000964896
Fragaria x ananassa Fvb5-4 3 CH_fan_421 6 6 0.000200754
Glycine max Gm19 3 CH_gma_157 9 10 0.0000000840036
Lonicera japonica GWHAAZE00000002 3 CH_lonja_269 8 8 0.000000725141
Lonicera japonica GWHAAZE00000007 3 CH_lonja_532 7 9 0.000518305
Lactuca sativa Lsat_1_v8_lg_7 3 CH_lsa_173 9 10 0.0000000626732
Magnolia biondii Chr02 3 CH_mbi_195 12 23 0.000000111908
Magnolia biondii Chr04 3 CH_mbi_220 10 15 0.000000255347
Papaver somniferum NC_039361.1 3 CH_pso_336 10 17 0.00000260728
Populus trichocarpa Chr07 3 CH_ptr_115 20 47 0.0000000000540787
Salvia bowleyana GWHASIU00000002 3 CH_sbo_118 20 75 0.00000000104279
Salvia bowleyana GWHASIU00000002 3 CH_sbo_199 10 17 0.000000269589
Salvia bowleyana GWHASIU00000002 3 CH_sbo_297 6 6 0.0000247947
Salvia bowleyana GWHASIU00000002 3 CH_sbo_499 5 5 0.000864254
Salix brachista GWHAAZH00000001 3 CH_sbr_250 7 8 0.0000700005
Sequoiadendron giganteum chr6 3 CH_sgi_362 16 26 0.0000000000483088
Sequoiadendron giganteum chr8 3 CH_sgi_890 9 13 0.0000212746
Solanum lycopersicum SL4.0ch01 3 CH_sly_244 9 12 0.00000296172
Schrenkiella parvula ch6-1 3 CH_spa_131 6 6 0.0000995138
Schrenkiella parvula ch7-4 3 CH_spa_199 16 74 0.000685324
Trochodendron aralioides group2 3 CH_tar_414 16 65 0.000378342
Theobroma cacao Chromosome_3 3 CH_tca_102 11 13 0.00000000191255
Vigna mungo CM024077.1 3 CH_vmu_87 8 8 0.000000126889
Vanilla planifolia CM028151.1 3 CH_vpl_221 6 6 0.0000773035
Vitis vinifera chr7 3 CH_vvi_363 17 71 0.000379688
Anthoceros agrestis Sc2ySwM_344 4 CH_aag_62 16 29 0.000000641952
Anthoceros agrestis Sc2ySwM_228 4 CH_aag_93 14 27 0.0000343379
Aquilegia oxysepala CHR04 4 CH_aox_146 12 27 0.0000235114
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 4 CH_arhy_442 10 19 0.0000274192
Arabidopsis thaliana Chr4 4 CH_ath_166 8 11 0.000000201082
Carpinus fangiana Cfa01 4 CH_cfa_194 13 35 0.0000228351
Corchorus olitorius AWUE01018369.1 4 CH_col_120 5 5 0.000886671
Capsella rubella scaffold_6 4 CH_cru_112 9 10 0.0000000615773
Davidia involucrata GWHABJS00000017 4 CH_din_264 6 6 0.000125704
Eucalyptus grandis Chr02 4 CH_egr_346 10 10 0.00000000180395
Erythranthe guttata scaffold_8 4 CH_egut_156 14 26 0.0000000393753
Erythranthe guttata scaffold_13 4 CH_egut_423 12 35 0.000964896
Fragaria x ananassa Fvb5-4 4 CH_fan_421 6 6 0.000200754
Glycine max Gm19 4 CH_gma_157 9 10 0.0000000840036
Lonicera japonica GWHAAZE00000002 4 CH_lonja_269 8 8 0.000000725141
Lonicera japonica GWHAAZE00000007 4 CH_lonja_532 7 9 0.000518305
Lactuca sativa Lsat_1_v8_lg_7 4 CH_lsa_173 9 10 0.0000000626732
Magnolia biondii Chr02 4 CH_mbi_195 12 23 0.000000111908
Magnolia biondii Chr04 4 CH_mbi_220 10 15 0.000000255347
Papaver somniferum NC_039361.1 4 CH_pso_336 10 17 0.00000260728
Populus trichocarpa Chr07 4 CH_ptr_115 20 47 0.0000000000540787
Salvia bowleyana GWHASIU00000002 4 CH_sbo_118 20 75 0.00000000104279
Salvia bowleyana GWHASIU00000002 4 CH_sbo_199 10 17 0.000000269589
Salvia bowleyana GWHASIU00000002 4 CH_sbo_297 6 6 0.0000247947
Salvia bowleyana GWHASIU00000002 4 CH_sbo_499 5 5 0.000864254
Salix brachista GWHAAZH00000001 4 CH_sbr_250 7 8 0.0000700005
Sequoiadendron giganteum chr6 4 CH_sgi_362 16 26 0.0000000000483088
Sequoiadendron giganteum chr8 4 CH_sgi_890 9 13 0.0000212746
Solanum lycopersicum SL4.0ch01 4 CH_sly_244 9 12 0.00000296172
Schrenkiella parvula ch6-1 4 CH_spa_131 6 6 0.0000995138
Schrenkiella parvula ch7-4 4 CH_spa_199 16 74 0.000685324
Trochodendron aralioides group2 4 CH_tar_414 16 65 0.000378342
Theobroma cacao Chromosome_3 4 CH_tca_102 11 13 0.00000000191255
Vigna mungo CM024077.1 4 CH_vmu_87 8 8 0.000000126889
Vanilla planifolia CM028151.1 4 CH_vpl_221 6 6 0.0000773035
Vitis vinifera chr7 4 CH_vvi_363 17 71 0.000379688

Available child term results

Ontology identifier Description Number of clusters
GO:0005506 iron ion binding 142
GO:0005507 copper ion binding 154
GO:0008198 ferrous iron binding 34
GO:0008199 ferric iron binding 12
GO:0008270 zinc ion binding 74
GO:0016151 nickel cation binding 12
GO:0030145 manganese ion binding 476
GO:0030151 molybdenum ion binding 8
GO:0046870 cadmium ion binding 26
GO:0050897 cobalt ion binding 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001