Functional clusters

Information

  • Type Gene Ontology
  • Description metal ion binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 3 CH_aag_120 15 30 0.00011659
Aethionema arabicum LG-6 3 CH_aar_254 7 8 0.00072148
Arabidopsis thaliana Chr5 3 CH_ath_64 28 78 0.0000000000314586
Beta vulgaris Chr4_EL10_PGA_scaffold1 3 CH_bvu_153 17 44 0.0000311474
Capsicum annuum PGAv.1.6.scaffold883 3 CH_can_186 9 9 0.000000681442
Chenopodium quinoa C_Quinoa_Scaffold_1337 3 CH_cqu_539 11 19 0.000835665
Eucalyptus grandis Chr05 3 CH_egr_795 21 72 0.000307073
Eucalyptus grandis Chr05 3 CH_egr_836 10 17 0.000434208
Fragaria x ananassa Fvb3-3 3 CH_fan_364 13 29 0.0000810699
Glycine max Gm15 3 CH_gma_32 17 18 0.00000000000000159657
Lactuca sativa Lsat_1_v8_lg_6 3 CH_lsa_436 18 61 0.000329114
Medicago truncatula chr5 3 CH_mtr_289 24 76 0.000000115721
Medicago truncatula chr3 3 CH_mtr_437 19 59 0.0000150306
Medicago truncatula chr5 3 CH_mtr_725 8 11 0.00073199
Medicago truncatula chr4 3 CH_mtr_726 8 11 0.00073199
Nelumbo nucifera chr2 3 CH_nnu_217 18 69 0.000141392
Nelumbo nucifera chr3 3 CH_nnu_239 7 8 0.000201718
Prunus persica Pp05 3 CH_ppe_215 9 9 0.000000586115
Pisum sativum chr4LG4 3 CH_psa_348 13 40 0.00051788
Papaver somniferum NC_039361.1 3 CH_pso_156 16 28 0.000000000679483
Papaver somniferum NC_039365.1 3 CH_pso_170 20 49 0.00000000132168
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_206 20 50 0.00000000380086
Rosa chinensis RcHm_v2.0_Chr7 3 CH_rch_541 20 80 0.0000685316
Sechium edule LG05 3 CH_sed_216 7 7 0.000229041
Sequoiadendron giganteum chr9 3 CH_sgi_1056 8 9 0.000102675
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_201 30 63 0.00000000000000700025
Sequoiadendron giganteum chr6 3 CH_sgi_231 22 34 0.000000000000061755
Sequoiadendron giganteum chr1 3 CH_sgi_537 17 31 0.0000000247435
Sequoiadendron giganteum chr4 3 CH_sgi_858 10 13 0.0000119285
Solanum tuberosum ST4.03ch10 3 CH_stu_318 11 14 0.0000118065
Trochodendron aralioides group5 3 CH_tar_317 7 7 0.000168549
Theobroma cacao Chromosome_7 3 CH_tca_235 9 11 0.0000239735
Vigna mungo CM024072.1 3 CH_vmu_204 8 10 0.00013217
Anthoceros agrestis Sc2ySwM_340 4 CH_aag_120 15 30 0.00011659
Aethionema arabicum LG-6 4 CH_aar_254 7 8 0.00072148
Arabidopsis thaliana Chr5 4 CH_ath_64 28 78 0.0000000000314586
Beta vulgaris Chr4_EL10_PGA_scaffold1 4 CH_bvu_153 17 44 0.0000311474
Capsicum annuum PGAv.1.6.scaffold883 4 CH_can_186 9 9 0.000000681442
Chenopodium quinoa C_Quinoa_Scaffold_1337 4 CH_cqu_539 11 19 0.000835665
Eucalyptus grandis Chr05 4 CH_egr_795 21 72 0.000307073
Eucalyptus grandis Chr05 4 CH_egr_836 10 17 0.000434208
Fragaria x ananassa Fvb3-3 4 CH_fan_364 13 29 0.0000810699
Glycine max Gm15 4 CH_gma_32 17 18 0.00000000000000159657
Lactuca sativa Lsat_1_v8_lg_6 4 CH_lsa_436 18 61 0.000329114
Medicago truncatula chr5 4 CH_mtr_289 24 76 0.000000115721
Medicago truncatula chr3 4 CH_mtr_437 19 59 0.0000150306
Medicago truncatula chr5 4 CH_mtr_725 8 11 0.00073199
Medicago truncatula chr4 4 CH_mtr_726 8 11 0.00073199
Nelumbo nucifera chr2 4 CH_nnu_217 18 69 0.000141392
Nelumbo nucifera chr3 4 CH_nnu_239 7 8 0.000201718
Prunus persica Pp05 4 CH_ppe_215 9 9 0.000000586115
Pisum sativum chr4LG4 4 CH_psa_348 13 40 0.00051788
Papaver somniferum NC_039361.1 4 CH_pso_156 16 28 0.000000000679483
Papaver somniferum NC_039365.1 4 CH_pso_170 20 49 0.00000000132168
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_206 20 50 0.00000000380086
Rosa chinensis RcHm_v2.0_Chr7 4 CH_rch_541 20 80 0.0000685316
Sechium edule LG05 4 CH_sed_216 7 7 0.000229041
Sequoiadendron giganteum chr9 4 CH_sgi_1056 8 9 0.000102675
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_201 30 63 0.00000000000000700025
Sequoiadendron giganteum chr6 4 CH_sgi_231 22 34 0.000000000000061755
Sequoiadendron giganteum chr1 4 CH_sgi_537 17 31 0.0000000247435
Sequoiadendron giganteum chr4 4 CH_sgi_858 10 13 0.0000119285
Solanum tuberosum ST4.03ch10 4 CH_stu_318 11 14 0.0000118065
Trochodendron aralioides group5 4 CH_tar_317 7 7 0.000168549
Theobroma cacao Chromosome_7 4 CH_tca_235 9 11 0.0000239735
Vigna mungo CM024072.1 4 CH_vmu_204 8 10 0.00013217

Available child term results

Ontology identifier Description Number of clusters
GO:0000287 magnesium ion binding 8
GO:0005506 iron ion binding 142
GO:0005507 copper ion binding 154
GO:0005509 calcium ion binding 176
GO:0008198 ferrous iron binding 34
GO:0008199 ferric iron binding 12
GO:0008270 zinc ion binding 74
GO:0016151 nickel cation binding 12
GO:0030145 manganese ion binding 476
GO:0030151 molybdenum ion binding 8
GO:0030955 potassium ion binding 18
GO:0046870 cadmium ion binding 26
GO:0046914 transition metal ion binding 72
GO:0050897 cobalt ion binding 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001