Functional clusters

Information

  • Type Gene Ontology
  • Description fatty acid binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_8 3 CH_aly_157 3 4 0.00000951219
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 3 CH_arhy_229 4 5 0.00000000706227
Arabidopsis thaliana Chr5 3 CH_ath_455 3 10 0.000142975
Amborella trichopoda AmTr_v1.0_scaffold00005 3 CH_atr_94 4 8 0.000000105248
Brassica napus A02 3 CH_bna_338 3 3 0.0000114214
Brassica napus C02 3 CH_bna_576 3 7 0.000399191
Brassica napus A10 3 CH_bna_638 3 8 0.000638481
Brassica oleracea C2 3 CH_bol_194 3 3 0.00000416677
Brassica rapa A02 3 CH_bra_127 3 3 0.0000048963
Brassica rapa A10 3 CH_bra_183 3 6 0.0000978252
Beta vulgaris Chr5_EL10_PGA_scaffold2 3 CH_bvu_35 5 6 0.00000000000167444
Citrus clementina scaffold_6 3 CH_ccl_221 3 3 0.0000028869
Carpinus fangiana Cfa01 3 CH_cfa_158 3 4 0.00000289032
Cardamine hirsuta Chr8 3 CH_chi_154 3 3 0.00000260868
Chenopodium quinoa C_Quinoa_Scaffold_1703 3 CH_cqu_59 5 6 0.000000000000681071
Capsella rubella scaffold_8 3 CH_cru_94 4 6 0.0000000239943
Durio zibethinus NW_019168492.1 3 CH_dzi_23 8 40 0.00000000000000352577
Eucalyptus grandis Chr07 3 CH_egr_411 4 6 0.0000000214593
Eutrema salsugineum scaffold_2 3 CH_esa_110 3 3 0.00000395783
Glycine max Gm18 3 CH_gma_15 9 9 5.75122e-25
Medicago truncatula chr4 3 CH_mtr_176 4 4 0.000000000378714
Nelumbo nucifera chr1 3 CH_nnu_137 3 4 0.00000306216
Oryza sativa ssp. japonica chr07 3 CH_osa_375 3 9 0.000238544
Punica granatum NC_045128.1 3 CH_pgr_114 4 6 0.0000000190198
Physcomitrium patens Chr11 3 CH_ppa_150 3 4 0.000189877
Physcomitrium patens Chr11 3 CH_ppa_7 7 22 0.00000000000885802
Prunus persica Pp02 3 CH_ppe_249 3 3 0.00000379798
Pisum sativum chr7LG7 3 CH_psa_118 3 3 0.000000489798
Quercus lobata 8 3 CH_qlo_551 3 4 0.00000263848
Simmondsia chinensis GWHAASQ00000017 3 CH_sci_10 7 8 8.23977e-19
Sequoiadendron giganteum chr1 3 CH_sgi_1284 2 2 0.000487151
Arabidopsis lyrata scaffold_8 4 CH_aly_157 3 4 0.00000951219
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 4 CH_arhy_229 4 5 0.00000000706227
Arabidopsis thaliana Chr5 4 CH_ath_455 3 10 0.000142975
Amborella trichopoda AmTr_v1.0_scaffold00005 4 CH_atr_94 4 8 0.000000105248
Brassica napus A02 4 CH_bna_338 3 3 0.0000114214
Brassica napus C02 4 CH_bna_576 3 7 0.000399191
Brassica napus A10 4 CH_bna_638 3 8 0.000638481
Brassica oleracea C2 4 CH_bol_194 3 3 0.00000416677
Brassica rapa A02 4 CH_bra_127 3 3 0.0000048963
Brassica rapa A10 4 CH_bra_183 3 6 0.0000978252
Beta vulgaris Chr5_EL10_PGA_scaffold2 4 CH_bvu_35 5 6 0.00000000000167444
Citrus clementina scaffold_6 4 CH_ccl_221 3 3 0.0000028869
Carpinus fangiana Cfa01 4 CH_cfa_158 3 4 0.00000289032
Cardamine hirsuta Chr8 4 CH_chi_154 3 3 0.00000260868
Chenopodium quinoa C_Quinoa_Scaffold_1703 4 CH_cqu_59 5 6 0.000000000000681071
Capsella rubella scaffold_8 4 CH_cru_94 4 6 0.0000000239943
Durio zibethinus NW_019168492.1 4 CH_dzi_23 8 40 0.00000000000000352577
Eucalyptus grandis Chr07 4 CH_egr_411 4 6 0.0000000214593
Eutrema salsugineum scaffold_2 4 CH_esa_110 3 3 0.00000395783
Glycine max Gm18 4 CH_gma_15 9 9 5.75122e-25
Medicago truncatula chr4 4 CH_mtr_176 4 4 0.000000000378714
Nelumbo nucifera chr1 4 CH_nnu_137 3 4 0.00000306216
Oryza sativa ssp. japonica chr07 4 CH_osa_375 3 9 0.000238544
Punica granatum NC_045128.1 4 CH_pgr_114 4 6 0.0000000190198
Physcomitrium patens Chr11 4 CH_ppa_150 3 4 0.000189877
Physcomitrium patens Chr11 4 CH_ppa_7 7 22 0.00000000000885802
Prunus persica Pp02 4 CH_ppe_249 3 3 0.00000379798
Pisum sativum chr7LG7 4 CH_psa_118 3 3 0.000000489798
Quercus lobata 8 4 CH_qlo_551 3 4 0.00000263848
Simmondsia chinensis GWHAASQ00000017 4 CH_sci_10 7 8 8.23977e-19
Sequoiadendron giganteum chr1 4 CH_sgi_1284 2 2 0.000487151

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001