Functional clusters

Information

  • Type Gene Ontology
  • Description small molecule binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB07 3 CH_bca_106 30 73 0.000000000297083
Brassica carinata ChrC06 3 CH_bca_587 22 64 0.000084213
Brassica carinata ChrB07 3 CH_bca_67 30 64 0.00000000000343129
Citrus clementina scaffold_5 3 CH_ccl_233 30 72 0.00000496895
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_338 16 28 0.0000516615
Micromonas commoda Chr_01 3 CH_mco_21 9 11 0.000440839
Quercus lobata 5 3 CH_qlo_786 24 48 0.000118471
Sequoiadendron giganteum chr11 3 CH_sgi_1320 24 61 0.000681585
Sequoiadendron giganteum chr5 3 CH_sgi_368 30 53 0.0000000000708927
Brassica carinata ChrB07 4 CH_bca_106 30 73 0.000000000297083
Brassica carinata ChrC06 4 CH_bca_587 22 64 0.000084213
Brassica carinata ChrB07 4 CH_bca_67 30 64 0.00000000000343129
Citrus clementina scaffold_5 4 CH_ccl_233 30 72 0.00000496895
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_338 16 28 0.0000516615
Micromonas commoda Chr_01 4 CH_mco_21 9 11 0.000440839
Quercus lobata 5 4 CH_qlo_786 24 48 0.000118471
Sequoiadendron giganteum chr11 4 CH_sgi_1320 24 61 0.000681585
Sequoiadendron giganteum chr5 4 CH_sgi_368 30 53 0.0000000000708927

Available child term results

Ontology identifier Description Number of clusters
GO:0000062 fatty-acyl-CoA binding 4
GO:0000774 adenyl-nucleotide exchange factor activity 10
GO:0000822 inositol hexakisphosphate binding 2
GO:0005524 ATP binding 56
GO:0005525 GTP binding 14
GO:0005534 galactose binding 16
GO:0005536 glucose binding 16
GO:0005542 folic acid binding 88
GO:0010013 N-1-naphthylphthalamic acid binding 28
GO:0010181 FMN binding 84
GO:0010331 gibberellin binding 4
GO:0010427 abscisic acid binding 174
GO:0016208 AMP binding 2
GO:0017076 purine nucleotide binding 6
GO:0019001 guanyl nucleotide binding 10
GO:0019003 GDP binding 4
GO:0019825 oxygen binding 34
GO:0019842 vitamin binding 2
GO:0030170 pyridoxal phosphate binding 44
GO:0030976 thiamine pyrophosphate binding 42
GO:0031177 phosphopantetheine binding 12
GO:0031418 L-ascorbic acid binding 32
GO:0031419 cobalamin binding 2
GO:0032549 ribonucleoside binding 56
GO:0032553 ribonucleotide binding 52
GO:0032555 purine ribonucleotide binding 14
GO:0043177 organic acid binding 2
GO:0043531 ADP binding 1320
GO:0050660 flavin adenine dinucleotide binding 316
GO:0050661 NADP binding 8
GO:0051287 NAD binding 38
GO:0070401 NADP+ binding 18
GO:0070402 NADPH binding 2
GO:0070403 NAD+ binding 12
GO:0071949 FAD binding 174
GO:1901149 salicylic acid binding 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001