Functional clusters
Information
- Type Gene Ontology
- Description DNA binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-7 | 3 | CH_aar_252 | 8 | 10 | 0.000631574 |
| Aethionema arabicum | LG-8 | 3 | CH_aar_95 | 9 | 9 | 0.00000115192 |
| Aquilegia oxysepala | CHR06 | 3 | CH_aox_287 | 7 | 8 | 0.000587946 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 3 | CH_arhy_176 | 14 | 17 | 0.000000000046412 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 3 | CH_arhy_94 | 17 | 19 | 0.00000000000000175468 |
| Brassica carinata | ChrB07 | 3 | CH_bca_741 | 19 | 69 | 0.000286774 |
| Brassica napus | C05 | 3 | CH_bna_205 | 12 | 17 | 0.000000245223 |
| Brassica oleracea | C5 | 3 | CH_bol_247 | 10 | 16 | 0.0000373021 |
| Camellia sinensis var. sinensis | Chr8 | 3 | CH_camsi_779 | 16 | 58 | 0.000655419 |
| Cannabis sativa | NC_044373.1 | 3 | CH_cansat_11 | 27 | 37 | 9.22146e-24 |
| Cannabis sativa | NC_044371.1 | 3 | CH_cansat_140 | 14 | 31 | 0.00000101928 |
| Cannabis sativa | NC_044377.1 | 3 | CH_cansat_42 | 15 | 18 | 0.000000000000275314 |
| Corylus avellana | 4 | 3 | CH_cav_305 | 10 | 18 | 0.000208073 |
| Citrus clementina | scaffold_8 | 3 | CH_ccl_383 | 10 | 18 | 0.00048152 |
| Carpinus fangiana | Cfa02 | 3 | CH_cfa_128 | 9 | 10 | 0.000000562686 |
| Carpinus fangiana | Cfa08 | 3 | CH_cfa_52 | 15 | 21 | 0.0000000000395906 |
| Corchorus olitorius | AWUE01014688.1 | 3 | CH_col_103 | 7 | 9 | 0.000735307 |
| Corchorus olitorius | AWUE01014740.1 | 3 | CH_col_27 | 11 | 13 | 0.0000000216052 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2888 | 3 | CH_cqu_305 | 8 | 8 | 0.0000211099 |
| Daucus carota | DCARv2_Chr9 | 3 | CH_dca_187 | 11 | 15 | 0.00000720059 |
| Daucus carota | DCARv2_Chr5 | 3 | CH_dca_333 | 19 | 59 | 0.000369107 |
| Davidia involucrata | GWHABJS00000009 | 3 | CH_din_309 | 7 | 8 | 0.000272085 |
| Davidia involucrata | GWHABJS00000021 | 3 | CH_din_310 | 7 | 8 | 0.000272085 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 3 | CH_eca_367 | 11 | 29 | 0.000275265 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 3 | CH_eca_473 | 11 | 32 | 0.000920351 |
| Eucalyptus grandis | Chr04 | 3 | CH_egr_611 | 9 | 12 | 0.0000154321 |
| Eucalyptus grandis | Chr07 | 3 | CH_egr_701 | 8 | 10 | 0.0000649927 |
| Fragaria vesca | Fvb1 | 3 | CH_fve_66 | 12 | 13 | 0.000000000172601 |
| Gossypium hirsutum | D04 | 3 | CH_ghi_107 | 17 | 22 | 0.0000000000089463 |
| Gossypium hirsutum | D03 | 3 | CH_ghi_368 | 9 | 10 | 0.0000142506 |
| Gossypium hirsutum | A04 | 3 | CH_ghi_544 | 12 | 23 | 0.000282338 |
| Gossypium hirsutum | D12 | 3 | CH_ghi_559 | 7 | 7 | 0.000360643 |
| Gossypium raimondii | Chr12 | 3 | CH_gra_104 | 15 | 22 | 0.0000000146163 |
| Gossypium raimondii | Chr03 | 3 | CH_gra_147 | 10 | 11 | 0.000000921656 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_430 | 7 | 8 | 0.000176938 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_207 | 13 | 22 | 0.000000364001 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 3 | CH_lsa_516 | 16 | 56 | 0.000938544 |
| Malus domestica | Chr07 | 3 | CH_mdo_376 | 11 | 20 | 0.0000282968 |
| Malus domestica | Chr01 | 3 | CH_mdo_55 | 21 | 36 | 0.0000000000000646068 |
| Manihot esculenta | Chromosome10 | 3 | CH_mes_102 | 14 | 15 | 0.0000000000286323 |
| Manihot esculenta | Chromosome05 | 3 | CH_mes_118 | 14 | 16 | 0.000000000214226 |
| Manihot esculenta | Chromosome07 | 3 | CH_mes_284 | 10 | 14 | 0.0000677087 |
| Medicago truncatula | chr1 | 3 | CH_mtr_201 | 12 | 15 | 0.00000000190519 |
| Medicago truncatula | chr3 | 3 | CH_mtr_330 | 9 | 10 | 0.000000462261 |
| Medicago truncatula | chr3 | 3 | CH_mtr_701 | 6 | 6 | 0.000485675 |
| Nelumbo nucifera | chr6 | 3 | CH_nnu_288 | 8 | 13 | 0.000473528 |
| Nicotiana tabacum | Nitab4.5_0000090 | 3 | CH_nta_127 | 6 | 6 | 0.000545429 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_252 | 13 | 28 | 0.0000208999 |
| Prunus persica | Pp07 | 3 | CH_ppe_165 | 11 | 12 | 0.00000000999706 |
| Prunus persica | Pp02 | 3 | CH_ppe_84 | 19 | 29 | 0.00000000000148116 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_579 | 6 | 6 | 0.000298252 |
| Papaver somniferum | NW_020619603.1 | 3 | CH_pso_604 | 7 | 9 | 0.000387517 |
| Populus trichocarpa | Chr03 | 3 | CH_ptr_155 | 13 | 16 | 0.00000000802234 |
| Populus trichocarpa | Chr15 | 3 | CH_ptr_273 | 13 | 23 | 0.0000105084 |
| Populus trichocarpa | Chr04 | 3 | CH_ptr_96 | 17 | 22 | 0.00000000000638942 |
| Phaseolus vulgaris | Chr10 | 3 | CH_pvu_348 | 8 | 10 | 0.000565067 |
| Quercus lobata | 9 | 3 | CH_qlo_556 | 11 | 16 | 0.00000279345 |
| Quercus lobata | 8 | 3 | CH_qlo_988 | 7 | 8 | 0.000595976 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_57 | 18 | 20 | 3.11951e-18 |
| Rhododendron simsii | chr11 | 3 | CH_rsi_332 | 12 | 23 | 0.0000468815 |
| Rhododendron simsii | chr13 | 3 | CH_rsi_335 | 9 | 12 | 0.0000567235 |
| Salvia bowleyana | GWHASIU00000001 | 3 | CH_sbo_188 | 8 | 8 | 0.000000135826 |
| Salix brachista | GWHAAZH00000015 | 3 | CH_sbr_151 | 10 | 11 | 0.000000542164 |
| Salix brachista | GWHAAZH00000017 | 3 | CH_sbr_333 | 8 | 10 | 0.000476559 |
| Salix brachista | GWHAAZH00000001 | 3 | CH_sbr_35 | 16 | 17 | 0.0000000000000698035 |
| Salix brachista | GWHAAZH00000003 | 3 | CH_sbr_65 | 23 | 47 | 0.0000000000800377 |
| Salix brachista | GWHAAZH00000011 | 3 | CH_sbr_68 | 14 | 16 | 0.000000000106027 |
| Salix brachista | GWHAAZH00000019 | 3 | CH_sbr_83 | 12 | 13 | 0.00000000280275 |
| Simmondsia chinensis | GWHAASQ00000009 | 3 | CH_sci_230 | 10 | 18 | 0.00037998 |
| Sechium edule | LG10 | 3 | CH_sed_286 | 12 | 24 | 0.000802649 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_1058 | 11 | 24 | 0.00010633 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_87 | 25 | 32 | 2.87342e-23 |
| Solanum pennellii | Spenn-ch02 | 3 | CH_spe_430 | 15 | 57 | 0.000475612 |
| Solanum tuberosum | ST4.03ch02 | 3 | CH_stu_279 | 9 | 10 | 0.00000336099 |
| Theobroma cacao | Chromosome_2 | 3 | CH_tca_38 | 27 | 58 | 0.0000000000000241515 |
| Theobroma cacao | Chromosome_2 | 3 | CH_tca_93 | 15 | 23 | 0.000000000616752 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 3 | CH_tpr_190 | 8 | 9 | 0.0000455077 |
| Tripterygium wilfordii | NC_052248.1 | 3 | CH_twi_103 | 11 | 12 | 0.0000000778256 |
| Tripterygium wilfordii | NC_052247.1 | 3 | CH_twi_217 | 13 | 25 | 0.0000785282 |
| Tripterygium wilfordii | NC_052245.1 | 3 | CH_twi_98 | 13 | 17 | 0.0000000612851 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_203 | 7 | 7 | 0.000087523 |
| Zea mays | 1 | 3 | CH_zma_345 | 8 | 9 | 0.000874145 |
| Aethionema arabicum | LG-7 | 4 | CH_aar_252 | 8 | 10 | 0.000631574 |
| Aethionema arabicum | LG-8 | 4 | CH_aar_95 | 9 | 9 | 0.00000115192 |
| Aquilegia oxysepala | CHR06 | 4 | CH_aox_287 | 7 | 8 | 0.000587946 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 4 | CH_arhy_176 | 14 | 17 | 0.000000000046412 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 4 | CH_arhy_94 | 17 | 19 | 0.00000000000000175468 |
| Brassica carinata | ChrB07 | 4 | CH_bca_741 | 19 | 69 | 0.000286774 |
| Brassica napus | C05 | 4 | CH_bna_205 | 12 | 17 | 0.000000245223 |
| Brassica oleracea | C5 | 4 | CH_bol_247 | 10 | 16 | 0.0000373021 |
| Camellia sinensis var. sinensis | Chr8 | 4 | CH_camsi_779 | 16 | 58 | 0.000655419 |
| Cannabis sativa | NC_044373.1 | 4 | CH_cansat_11 | 27 | 37 | 9.22146e-24 |
| Cannabis sativa | NC_044371.1 | 4 | CH_cansat_140 | 14 | 31 | 0.00000101928 |
| Cannabis sativa | NC_044377.1 | 4 | CH_cansat_42 | 15 | 18 | 0.000000000000275314 |
| Corylus avellana | 4 | 4 | CH_cav_305 | 10 | 18 | 0.000208073 |
| Citrus clementina | scaffold_8 | 4 | CH_ccl_383 | 10 | 18 | 0.00048152 |
| Carpinus fangiana | Cfa02 | 4 | CH_cfa_128 | 9 | 10 | 0.000000562686 |
| Carpinus fangiana | Cfa08 | 4 | CH_cfa_52 | 15 | 21 | 0.0000000000395906 |
| Corchorus olitorius | AWUE01014688.1 | 4 | CH_col_103 | 7 | 9 | 0.000735307 |
| Corchorus olitorius | AWUE01014740.1 | 4 | CH_col_27 | 11 | 13 | 0.0000000216052 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2888 | 4 | CH_cqu_305 | 8 | 8 | 0.0000211099 |
| Daucus carota | DCARv2_Chr9 | 4 | CH_dca_187 | 11 | 15 | 0.00000720059 |
| Daucus carota | DCARv2_Chr5 | 4 | CH_dca_333 | 19 | 59 | 0.000369107 |
| Davidia involucrata | GWHABJS00000009 | 4 | CH_din_309 | 7 | 8 | 0.000272085 |
| Davidia involucrata | GWHABJS00000021 | 4 | CH_din_310 | 7 | 8 | 0.000272085 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 4 | CH_eca_367 | 11 | 29 | 0.000275265 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 4 | CH_eca_473 | 11 | 32 | 0.000920351 |
| Eucalyptus grandis | Chr04 | 4 | CH_egr_611 | 9 | 12 | 0.0000154321 |
| Eucalyptus grandis | Chr07 | 4 | CH_egr_701 | 8 | 10 | 0.0000649927 |
| Fragaria vesca | Fvb1 | 4 | CH_fve_66 | 12 | 13 | 0.000000000172601 |
| Gossypium hirsutum | D04 | 4 | CH_ghi_107 | 17 | 22 | 0.0000000000089463 |
| Gossypium hirsutum | D03 | 4 | CH_ghi_368 | 9 | 10 | 0.0000142506 |
| Gossypium hirsutum | A04 | 4 | CH_ghi_544 | 12 | 23 | 0.000282338 |
| Gossypium hirsutum | D12 | 4 | CH_ghi_559 | 7 | 7 | 0.000360643 |
| Gossypium raimondii | Chr12 | 4 | CH_gra_104 | 15 | 22 | 0.0000000146163 |
| Gossypium raimondii | Chr03 | 4 | CH_gra_147 | 10 | 11 | 0.000000921656 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_430 | 7 | 8 | 0.000176938 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_207 | 13 | 22 | 0.000000364001 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 4 | CH_lsa_516 | 16 | 56 | 0.000938544 |
| Malus domestica | Chr07 | 4 | CH_mdo_376 | 11 | 20 | 0.0000282968 |
| Malus domestica | Chr01 | 4 | CH_mdo_55 | 21 | 36 | 0.0000000000000646068 |
| Manihot esculenta | Chromosome10 | 4 | CH_mes_102 | 14 | 15 | 0.0000000000286323 |
| Manihot esculenta | Chromosome05 | 4 | CH_mes_118 | 14 | 16 | 0.000000000214226 |
| Manihot esculenta | Chromosome07 | 4 | CH_mes_284 | 10 | 14 | 0.0000677087 |
| Medicago truncatula | chr1 | 4 | CH_mtr_201 | 12 | 15 | 0.00000000190519 |
| Medicago truncatula | chr3 | 4 | CH_mtr_330 | 9 | 10 | 0.000000462261 |
| Medicago truncatula | chr3 | 4 | CH_mtr_701 | 6 | 6 | 0.000485675 |
| Nelumbo nucifera | chr6 | 4 | CH_nnu_288 | 8 | 13 | 0.000473528 |
| Nicotiana tabacum | Nitab4.5_0000090 | 4 | CH_nta_127 | 6 | 6 | 0.000545429 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_252 | 13 | 28 | 0.0000208999 |
| Prunus persica | Pp07 | 4 | CH_ppe_165 | 11 | 12 | 0.00000000999706 |
| Prunus persica | Pp02 | 4 | CH_ppe_84 | 19 | 29 | 0.00000000000148116 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_579 | 6 | 6 | 0.000298252 |
| Papaver somniferum | NW_020619603.1 | 4 | CH_pso_604 | 7 | 9 | 0.000387517 |
| Populus trichocarpa | Chr03 | 4 | CH_ptr_155 | 13 | 16 | 0.00000000802234 |
| Populus trichocarpa | Chr15 | 4 | CH_ptr_273 | 13 | 23 | 0.0000105084 |
| Populus trichocarpa | Chr04 | 4 | CH_ptr_96 | 17 | 22 | 0.00000000000638942 |
| Phaseolus vulgaris | Chr10 | 4 | CH_pvu_348 | 8 | 10 | 0.000565067 |
| Quercus lobata | 9 | 4 | CH_qlo_556 | 11 | 16 | 0.00000279345 |
| Quercus lobata | 8 | 4 | CH_qlo_988 | 7 | 8 | 0.000595976 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_57 | 18 | 20 | 3.11951e-18 |
| Rhododendron simsii | chr11 | 4 | CH_rsi_332 | 12 | 23 | 0.0000468815 |
| Rhododendron simsii | chr13 | 4 | CH_rsi_335 | 9 | 12 | 0.0000567235 |
| Salvia bowleyana | GWHASIU00000001 | 4 | CH_sbo_188 | 8 | 8 | 0.000000135826 |
| Salix brachista | GWHAAZH00000015 | 4 | CH_sbr_151 | 10 | 11 | 0.000000542164 |
| Salix brachista | GWHAAZH00000017 | 4 | CH_sbr_333 | 8 | 10 | 0.000476559 |
| Salix brachista | GWHAAZH00000001 | 4 | CH_sbr_35 | 16 | 17 | 0.0000000000000698035 |
| Salix brachista | GWHAAZH00000003 | 4 | CH_sbr_65 | 23 | 47 | 0.0000000000800377 |
| Salix brachista | GWHAAZH00000011 | 4 | CH_sbr_68 | 14 | 16 | 0.000000000106027 |
| Salix brachista | GWHAAZH00000019 | 4 | CH_sbr_83 | 12 | 13 | 0.00000000280275 |
| Simmondsia chinensis | GWHAASQ00000009 | 4 | CH_sci_230 | 10 | 18 | 0.00037998 |
| Sechium edule | LG10 | 4 | CH_sed_286 | 12 | 24 | 0.000802649 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_1058 | 11 | 24 | 0.00010633 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_87 | 25 | 32 | 2.87342e-23 |
| Solanum pennellii | Spenn-ch02 | 4 | CH_spe_430 | 15 | 57 | 0.000475612 |
| Solanum tuberosum | ST4.03ch02 | 4 | CH_stu_279 | 9 | 10 | 0.00000336099 |
| Theobroma cacao | Chromosome_2 | 4 | CH_tca_38 | 27 | 58 | 0.0000000000000241515 |
| Theobroma cacao | Chromosome_2 | 4 | CH_tca_93 | 15 | 23 | 0.000000000616752 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 4 | CH_tpr_190 | 8 | 9 | 0.0000455077 |
| Tripterygium wilfordii | NC_052248.1 | 4 | CH_twi_103 | 11 | 12 | 0.0000000778256 |
| Tripterygium wilfordii | NC_052247.1 | 4 | CH_twi_217 | 13 | 25 | 0.0000785282 |
| Tripterygium wilfordii | NC_052245.1 | 4 | CH_twi_98 | 13 | 17 | 0.0000000612851 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_203 | 7 | 7 | 0.000087523 |
| Zea mays | 1 | 4 | CH_zma_345 | 8 | 9 | 0.000874145 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000400 | four-way junction DNA binding | 10 |
| GO:0000976 | transcription cis-regulatory region binding | 6 |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 44 |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 12 |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding | 20 |
| GO:0001164 | RNA polymerase I core promoter sequence-specific DNA binding | 4 |
| GO:0003680 | minor groove of adenine-thymine-rich DNA binding | 70 |
| GO:0003684 | damaged DNA binding | 8 |
| GO:0003688 | DNA replication origin binding | 4 |
| GO:0003690 | double-stranded DNA binding | 196 |
| GO:0003691 | double-stranded telomeric DNA binding | 14 |
| GO:0003697 | single-stranded DNA binding | 20 |
| GO:0008301 | DNA binding, bending | 4 |
| GO:0010385 | double-stranded methylated DNA binding | 2 |
| GO:0019237 | centromeric DNA binding | 8 |
| GO:0030983 | mismatched DNA binding | 46 |
| GO:0031490 | chromatin DNA binding | 80 |
| GO:0031492 | nucleosomal DNA binding | 2 |
| GO:0032142 | single guanine insertion binding | 2 |
| GO:0032422 | purine-rich negative regulatory element binding | 12 |
| GO:0043047 | single-stranded telomeric DNA binding | 8 |
| GO:0043565 | sequence-specific DNA binding | 36 |
| GO:0070888 | E-box binding | 38 |
| GO:0080084 | 5S rDNA binding | 8 |
| GO:0097100 | supercoiled DNA binding | 8 |
| GO:1990837 | sequence-specific double-stranded DNA binding | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |