Functional clusters

Information

  • Type Gene Ontology
  • Description nucleic acid binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr10 3 CH_camsi_653 25 64 0.000233433
Capsicum annuum PGAv.1.6.scaffold220 3 CH_can_187 13 15 0.000000818475
Cardamine hirsuta Chr7 3 CH_chi_397 22 52 0.000931512
Daucus carota DCARv2_Chr5 3 CH_dca_332 9 9 0.00036607
Erigeron canadensis Conyza_canadensis_scaffold:5 3 CH_eca_283 30 47 0.0000948641
Erigeron canadensis Conyza_canadensis_scaffold:3 3 CH_eca_392 30 49 0.000398052
Erigeron canadensis Conyza_canadensis_scaffold:7 3 CH_eca_453 28 45 0.000746826
Lactuca sativa Lsat_1_v8_lg_9 3 CH_lsa_437 25 68 0.000330464
Magnolia biondii Chr17 3 CH_mbi_514 26 65 0.000230069
Medicago truncatula chr3 3 CH_mtr_343 11 12 0.00000082316
Petunia axillaris Peaxi162Scf00554 3 CH_pax_104 14 17 0.00000069148
Quercus lobata CM012294 3 CH_qlo_635 15 21 0.0000120818
Quercus lobata 3 3 CH_qlo_636 15 21 0.0000120818
Solanum lycopersicum SL4.0ch06 3 CH_sly_321 10 10 0.0000408192
Solanum pennellii Spenn-ch04 3 CH_spe_205 30 43 0.00000373147
Solanum pennellii Spenn-ch01 3 CH_spe_221 30 44 0.00000914823
Solanum pennellii Spenn-ch06 3 CH_spe_329 26 38 0.000132924
Solanum pennellii Spenn-ch07 3 CH_spe_394 26 39 0.000311557
Camellia sinensis var. sinensis Chr10 4 CH_camsi_653 25 64 0.000233433
Capsicum annuum PGAv.1.6.scaffold220 4 CH_can_187 13 15 0.000000818475
Cardamine hirsuta Chr7 4 CH_chi_397 22 52 0.000931512
Daucus carota DCARv2_Chr5 4 CH_dca_332 9 9 0.00036607
Erigeron canadensis Conyza_canadensis_scaffold:5 4 CH_eca_283 30 47 0.0000948641
Erigeron canadensis Conyza_canadensis_scaffold:3 4 CH_eca_392 30 49 0.000398052
Erigeron canadensis Conyza_canadensis_scaffold:7 4 CH_eca_453 28 45 0.000746826
Lactuca sativa Lsat_1_v8_lg_9 4 CH_lsa_437 25 68 0.000330464
Magnolia biondii Chr17 4 CH_mbi_514 26 65 0.000230069
Medicago truncatula chr3 4 CH_mtr_343 11 12 0.00000082316
Petunia axillaris Peaxi162Scf00554 4 CH_pax_104 14 17 0.00000069148
Quercus lobata CM012294 4 CH_qlo_635 15 21 0.0000120818
Quercus lobata 3 4 CH_qlo_636 15 21 0.0000120818
Solanum lycopersicum SL4.0ch06 4 CH_sly_321 10 10 0.0000408192
Solanum pennellii Spenn-ch04 4 CH_spe_205 30 43 0.00000373147
Solanum pennellii Spenn-ch01 4 CH_spe_221 30 44 0.00000914823
Solanum pennellii Spenn-ch06 4 CH_spe_329 26 38 0.000132924
Solanum pennellii Spenn-ch07 4 CH_spe_394 26 39 0.000311557

Available child term results

Ontology identifier Description Number of clusters
GO:0000049 tRNA binding 6
GO:0000339 RNA cap binding 6
GO:0000400 four-way junction DNA binding 10
GO:0000976 transcription cis-regulatory region binding 6
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 44
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 12
GO:0000987 cis-regulatory region sequence-specific DNA binding 20
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding 4
GO:0002151 G-quadruplex RNA binding 10
GO:0003677 DNA binding 164
GO:0003680 minor groove of adenine-thymine-rich DNA binding 70
GO:0003684 damaged DNA binding 8
GO:0003688 DNA replication origin binding 4
GO:0003690 double-stranded DNA binding 196
GO:0003691 double-stranded telomeric DNA binding 14
GO:0003697 single-stranded DNA binding 20
GO:0003723 RNA binding 10
GO:0003725 double-stranded RNA binding 12
GO:0003729 mRNA binding 16
GO:0003730 mRNA 3'-UTR binding 10
GO:0003743 translation initiation factor activity 4
GO:0003746 translation elongation factor activity 62
GO:0003747 translation release factor activity 10
GO:0008097 5S rRNA binding 8
GO:0008143 poly(A) binding 6
GO:0008301 DNA binding, bending 4
GO:0008312 7S RNA binding 2
GO:0008494 translation activator activity 4
GO:0010385 double-stranded methylated DNA binding 2
GO:0017069 snRNA binding 2
GO:0017070 U6 snRNA binding 2
GO:0019237 centromeric DNA binding 8
GO:0019843 rRNA binding 8
GO:0030515 snoRNA binding 2
GO:0030533 triplet codon-amino acid adaptor activity 12
GO:0030620 U2 snRNA binding 6
GO:0030628 pre-mRNA 3'-splice site binding 26
GO:0030983 mismatched DNA binding 46
GO:0031490 chromatin DNA binding 80
GO:0031492 nucleosomal DNA binding 2
GO:0032142 single guanine insertion binding 2
GO:0032422 purine-rich negative regulatory element binding 12
GO:0034336 misfolded RNA binding 4
GO:0034511 U3 snoRNA binding 22
GO:0035197 siRNA binding 10
GO:0035198 miRNA binding 4
GO:0035925 mRNA 3'-UTR AU-rich region binding 2
GO:0036002 pre-mRNA binding 2
GO:0036310 annealing activity 2
GO:0042134 rRNA primary transcript binding 12
GO:0043047 single-stranded telomeric DNA binding 8
GO:0043565 sequence-specific DNA binding 36
GO:0048027 mRNA 5'-UTR binding 6
GO:0070878 primary miRNA binding 2
GO:0070888 E-box binding 38
GO:0080084 5S rDNA binding 8
GO:0097100 supercoiled DNA binding 8
GO:1990247 N6-methyladenosine-containing RNA binding 2
GO:1990825 sequence-specific mRNA binding 4
GO:1990837 sequence-specific double-stranded DNA binding 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001