Functional clusters

Information

  • Type Gene Ontology
  • Description FAD binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group23 3 CH_ach_192 3 5 0.000315597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 3 CH_arhy_449 3 3 0.0000314957
Arabidopsis thaliana Chr4 3 CH_ath_126 5 9 0.0000000162526
Arabidopsis thaliana Chr1 3 CH_ath_149 5 11 0.0000000594831
Arabidopsis thaliana Chr5 3 CH_ath_150 6 29 0.0000000655301
Arabidopsis thaliana Chr1 3 CH_ath_87 5 6 0.000000000776077
Amborella trichopoda AmTr_v1.0_scaffold00099 3 CH_atr_175 3 3 0.000034591
Brassica rapa A01 3 CH_bra_47 6 10 0.000000000676475
Brassica rapa A09 3 CH_bra_48 6 10 0.000000000676475
Brassica rapa A09 3 CH_bra_96 5 11 0.000000751114
Cannabis sativa NC_044373.1 3 CH_cansat_177 3 3 0.0000189186
Cannabis sativa NC_044370.1 3 CH_cansat_234 3 4 0.0000756271
Corylus avellana 1 3 CH_cav_106 4 5 0.000000101004
Citrus clementina scaffold_7 3 CH_ccl_333 3 4 0.000181327
Citrus clementina scaffold_1 3 CH_ccl_68 7 14 0.000000000000215316
Carpinus fangiana Cfa02 3 CH_cfa_38 7 12 0.000000000000626113
Carya illinoinensis Chr05 3 CH_cil_126 5 5 0.0000000000482627
Carya illinoinensis Chr03 3 CH_cil_81 6 7 0.000000000000334798
Cucumis melo chr12 3 CH_cme_11 12 31 1.64649e-21
Cucumis melo chr08 3 CH_cme_20 7 7 0.00000000000000140929
Cucumis melo chr01 3 CH_cme_275 3 4 0.000699622
Carica papaya supercontig_21 3 CH_cpa_50 4 4 0.00000003261
Chenopodium quinoa C_Quinoa_Scaffold_1257 3 CH_cqu_194 4 4 0.000000931836
Chenopodium quinoa C_Quinoa_Scaffold_1040 3 CH_cqu_195 4 4 0.000000931836
Chenopodium quinoa C_Quinoa_Scaffold_1611 3 CH_cqu_470 3 3 0.00043701
Chlamydomonas reinhardtii chromosome_2 3 CH_cre_70 5 42 0.000145338
Daucus carota DCARv2_Chr4 3 CH_dca_166 5 9 0.0000028213
Daucus carota DCARv2_Chr4 3 CH_dca_167 5 9 0.0000028213
Daucus carota DCARv2_Chr2 3 CH_dca_92 5 5 0.0000000226676
Durio zibethinus NW_019168270.1 3 CH_dzi_123 5 9 0.000000719711
Durio zibethinus NW_019168015.1 3 CH_dzi_200 4 7 0.0000441858
Durio zibethinus NW_019167904.1 3 CH_dzi_28 8 12 0.0000000000000155963
Durio zibethinus NW_019168381.1 3 CH_dzi_313 3 3 0.000553286
Durio zibethinus NW_019168037.1 3 CH_dzi_46 8 21 0.0000000000062993
Durio zibethinus NW_019167838.1 3 CH_dzi_98 5 7 0.0000000603184
Eucalyptus grandis Chr09 3 CH_egr_153 8 12 3.23747e-16
Eucalyptus grandis Chr03 3 CH_egr_216 6 6 0.000000000000354839
Eucalyptus grandis Chr05 3 CH_egr_270 7 18 0.0000000000153287
Eucalyptus grandis Chr09 3 CH_egr_75 10 13 3.17715e-22
Erythranthe guttata scaffold_1 3 CH_egut_62 6 7 0.000000000000237258
Fragaria x ananassa Fvb2-2 3 CH_fan_127 4 4 0.0000000384841
Fragaria vesca Fvb1 3 CH_fve_240 3 4 0.0000478683
Gossypium raimondii Chr02 3 CH_gra_120 4 4 0.000000075438
Helianthus annuus HanXRQChr12 3 CH_han_47 8 14 5.4676e-17
Helianthus annuus HanXRQChr13 3 CH_han_470 3 3 0.0000412688
Helianthus annuus HanXRQChr04 3 CH_han_94 6 9 0.00000000000227282
Lupinus albus Lalb_Chr15 3 CH_lal_177 4 5 0.00000438324
Lupinus albus Lalb_Chr07 3 CH_lal_350 3 3 0.000408089
Lotus japonicus chr5 3 CH_lja_197 3 3 0.000034478
Lonicera japonica GWHAAZE00000003 3 CH_lonja_125 8 32 0.00000000000478386
Lonicera japonica GWHAAZE00000007 3 CH_lonja_316 4 7 0.0000051767
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_441 3 6 0.000355683
Magnolia biondii Chr08 3 CH_mbi_448 4 21 0.000108808
Magnolia biondii Chr03 3 CH_mbi_449 3 4 0.000109893
Medicago truncatula chr1 3 CH_mtr_502 3 4 0.000045508
Oryza sativa ssp. japonica chr08 3 CH_osa_397 3 3 0.000318288
Oryza sativa ssp. japonica chr06 3 CH_osa_63 7 16 0.0000000000286747
Oryza sativa ssp. japonica chr03 3 CH_osa_86 6 10 0.000000000495442
Punica granatum NC_045132.1 3 CH_pgr_111 5 6 0.0000000100106
Punica granatum NC_045128.1 3 CH_pgr_338 3 3 0.000335393
Punica granatum NC_045133.1 3 CH_pgr_37 8 14 0.000000000000048555
Prunus persica Pp08 3 CH_ppe_347 3 4 0.00012191
Papaver somniferum NC_039363.1 3 CH_pso_201 5 12 0.00000000986557
Papaver somniferum NC_039358.1 3 CH_pso_90 6 9 0.000000000000673336
Populus trichocarpa Chr19 3 CH_ptr_43 7 7 3.02453e-17
Phaseolus vulgaris Chr07 3 CH_pvu_303 4 21 0.000287065
Quercus lobata 5 3 CH_qlo_6 17 19 1.44963e-39
Quercus lobata 6 3 CH_qlo_642 4 6 0.0000143914
Quercus lobata 11 3 CH_qlo_73 10 13 2.37359e-20
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_116 7 19 0.000000000000845626
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_390 4 9 0.00000389478
Salix brachista GWHAAZH00000016 3 CH_sbr_226 3 3 0.0000502476
Simmondsia chinensis GWHAASQ00000006 3 CH_sci_181 3 3 0.0001342
Simmondsia chinensis GWHAASQ00000001 3 CH_sci_182 3 3 0.0001342
Simmondsia chinensis GWHAASQ00000006 3 CH_sci_84 4 5 0.00000114115
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_1176 3 3 0.000194865
Sequoiadendron giganteum chr4 3 CH_sgi_1177 3 3 0.000194865
Sequoiadendron giganteum chr4 3 CH_sgi_414 6 11 0.000000000371492
Sequoiadendron giganteum chr8 3 CH_sgi_421 5 5 0.000000000511298
Sequoiadendron giganteum chr11 3 CH_sgi_740 4 5 0.00000158805
Solanum tuberosum ST4.03ch06 3 CH_stu_510 3 3 0.000265996
Trochodendron aralioides group5 3 CH_tar_27 6 7 0.000000000000136003
Trochodendron aralioides group11 3 CH_tar_305 3 4 0.000117914
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_172 4 10 0.0000158078
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_193 3 3 0.0000582231
Vigna mungo CM024071.1 3 CH_vmu_215 4 22 0.000183856
Zea mays 9 3 CH_zma_218 5 25 0.000136288
Actinidia chinensis Lachesis_group23 4 CH_ach_192 3 5 0.000315597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 4 CH_arhy_449 3 3 0.0000314957
Arabidopsis thaliana Chr4 4 CH_ath_126 5 9 0.0000000162526
Arabidopsis thaliana Chr1 4 CH_ath_149 5 11 0.0000000594831
Arabidopsis thaliana Chr5 4 CH_ath_150 6 29 0.0000000655301
Arabidopsis thaliana Chr1 4 CH_ath_87 5 6 0.000000000776077
Amborella trichopoda AmTr_v1.0_scaffold00099 4 CH_atr_175 3 3 0.000034591
Brassica rapa A01 4 CH_bra_47 6 10 0.000000000676475
Brassica rapa A09 4 CH_bra_48 6 10 0.000000000676475
Brassica rapa A09 4 CH_bra_96 5 11 0.000000751114
Cannabis sativa NC_044373.1 4 CH_cansat_177 3 3 0.0000189186
Cannabis sativa NC_044370.1 4 CH_cansat_234 3 4 0.0000756271
Corylus avellana 1 4 CH_cav_106 4 5 0.000000101004
Citrus clementina scaffold_7 4 CH_ccl_333 3 4 0.000181327
Citrus clementina scaffold_1 4 CH_ccl_68 7 14 0.000000000000215316
Carpinus fangiana Cfa02 4 CH_cfa_38 7 12 0.000000000000626113
Carya illinoinensis Chr05 4 CH_cil_126 5 5 0.0000000000482627
Carya illinoinensis Chr03 4 CH_cil_81 6 7 0.000000000000334798
Cucumis melo chr12 4 CH_cme_11 12 31 1.64649e-21
Cucumis melo chr08 4 CH_cme_20 7 7 0.00000000000000140929
Cucumis melo chr01 4 CH_cme_275 3 4 0.000699622
Carica papaya supercontig_21 4 CH_cpa_50 4 4 0.00000003261
Chenopodium quinoa C_Quinoa_Scaffold_1257 4 CH_cqu_194 4 4 0.000000931836
Chenopodium quinoa C_Quinoa_Scaffold_1040 4 CH_cqu_195 4 4 0.000000931836
Chenopodium quinoa C_Quinoa_Scaffold_1611 4 CH_cqu_470 3 3 0.00043701
Chlamydomonas reinhardtii chromosome_2 4 CH_cre_70 5 42 0.000145338
Daucus carota DCARv2_Chr4 4 CH_dca_166 5 9 0.0000028213
Daucus carota DCARv2_Chr4 4 CH_dca_167 5 9 0.0000028213
Daucus carota DCARv2_Chr2 4 CH_dca_92 5 5 0.0000000226676
Durio zibethinus NW_019168270.1 4 CH_dzi_123 5 9 0.000000719711
Durio zibethinus NW_019168015.1 4 CH_dzi_200 4 7 0.0000441858
Durio zibethinus NW_019167904.1 4 CH_dzi_28 8 12 0.0000000000000155963
Durio zibethinus NW_019168381.1 4 CH_dzi_313 3 3 0.000553286
Durio zibethinus NW_019168037.1 4 CH_dzi_46 8 21 0.0000000000062993
Durio zibethinus NW_019167838.1 4 CH_dzi_98 5 7 0.0000000603184
Eucalyptus grandis Chr09 4 CH_egr_153 8 12 3.23747e-16
Eucalyptus grandis Chr03 4 CH_egr_216 6 6 0.000000000000354839
Eucalyptus grandis Chr05 4 CH_egr_270 7 18 0.0000000000153287
Eucalyptus grandis Chr09 4 CH_egr_75 10 13 3.17715e-22
Erythranthe guttata scaffold_1 4 CH_egut_62 6 7 0.000000000000237258
Fragaria x ananassa Fvb2-2 4 CH_fan_127 4 4 0.0000000384841
Fragaria vesca Fvb1 4 CH_fve_240 3 4 0.0000478683
Gossypium raimondii Chr02 4 CH_gra_120 4 4 0.000000075438
Helianthus annuus HanXRQChr12 4 CH_han_47 8 14 5.4676e-17
Helianthus annuus HanXRQChr13 4 CH_han_470 3 3 0.0000412688
Helianthus annuus HanXRQChr04 4 CH_han_94 6 9 0.00000000000227282
Lupinus albus Lalb_Chr15 4 CH_lal_177 4 5 0.00000438324
Lupinus albus Lalb_Chr07 4 CH_lal_350 3 3 0.000408089
Lotus japonicus chr5 4 CH_lja_197 3 3 0.000034478
Lonicera japonica GWHAAZE00000003 4 CH_lonja_125 8 32 0.00000000000478386
Lonicera japonica GWHAAZE00000007 4 CH_lonja_316 4 7 0.0000051767
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_441 3 6 0.000355683
Magnolia biondii Chr08 4 CH_mbi_448 4 21 0.000108808
Magnolia biondii Chr03 4 CH_mbi_449 3 4 0.000109893
Medicago truncatula chr1 4 CH_mtr_502 3 4 0.000045508
Oryza sativa ssp. japonica chr08 4 CH_osa_397 3 3 0.000318288
Oryza sativa ssp. japonica chr06 4 CH_osa_63 7 16 0.0000000000286747
Oryza sativa ssp. japonica chr03 4 CH_osa_86 6 10 0.000000000495442
Punica granatum NC_045132.1 4 CH_pgr_111 5 6 0.0000000100106
Punica granatum NC_045128.1 4 CH_pgr_338 3 3 0.000335393
Punica granatum NC_045133.1 4 CH_pgr_37 8 14 0.000000000000048555
Prunus persica Pp08 4 CH_ppe_347 3 4 0.00012191
Papaver somniferum NC_039363.1 4 CH_pso_201 5 12 0.00000000986557
Papaver somniferum NC_039358.1 4 CH_pso_90 6 9 0.000000000000673336
Populus trichocarpa Chr19 4 CH_ptr_43 7 7 3.02453e-17
Phaseolus vulgaris Chr07 4 CH_pvu_303 4 21 0.000287065
Quercus lobata 5 4 CH_qlo_6 17 19 1.44963e-39
Quercus lobata 6 4 CH_qlo_642 4 6 0.0000143914
Quercus lobata 11 4 CH_qlo_73 10 13 2.37359e-20
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_116 7 19 0.000000000000845626
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_390 4 9 0.00000389478
Salix brachista GWHAAZH00000016 4 CH_sbr_226 3 3 0.0000502476
Simmondsia chinensis GWHAASQ00000006 4 CH_sci_181 3 3 0.0001342
Simmondsia chinensis GWHAASQ00000001 4 CH_sci_182 3 3 0.0001342
Simmondsia chinensis GWHAASQ00000006 4 CH_sci_84 4 5 0.00000114115
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_1176 3 3 0.000194865
Sequoiadendron giganteum chr4 4 CH_sgi_1177 3 3 0.000194865
Sequoiadendron giganteum chr4 4 CH_sgi_414 6 11 0.000000000371492
Sequoiadendron giganteum chr8 4 CH_sgi_421 5 5 0.000000000511298
Sequoiadendron giganteum chr11 4 CH_sgi_740 4 5 0.00000158805
Solanum tuberosum ST4.03ch06 4 CH_stu_510 3 3 0.000265996
Trochodendron aralioides group5 4 CH_tar_27 6 7 0.000000000000136003
Trochodendron aralioides group11 4 CH_tar_305 3 4 0.000117914
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_172 4 10 0.0000158078
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_193 3 3 0.0000582231
Vigna mungo CM024071.1 4 CH_vmu_215 4 22 0.000183856
Zea mays 9 4 CH_zma_218 5 25 0.000136288

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001