Functional clusters

Information

  • Type Gene Ontology
  • Description heterocyclic compound binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 3 CH_amhyb_169 18 24 0.000280077
Arabidopsis thaliana Chr5 3 CH_ath_398 30 80 0.0000720951
Arabidopsis thaliana Chr1 3 CH_ath_463 29 79 0.00017174
Arabidopsis thaliana Chr3 3 CH_ath_464 29 78 0.00017174
Camellia sinensis var. sinensis Chr4 3 CH_camsi_621 30 51 0.000152384
Coffea canephora chr3 3 CH_ccan_210 12 66 0.0000442063
Ceratophyllum demersum 2 3 CH_cde_124 26 38 0.000193441
Eutrema salsugineum scaffold_15 3 CH_esa_249 21 29 0.000587651
Fragaria x ananassa Fvb7-1 3 CH_fan_565 11 11 0.000996129
Helianthus annuus HanXRQChr11 3 CH_han_496 29 46 0.0000845861
Magnolia biondii Chr02 3 CH_mbi_329 30 50 0.00000758087
Magnolia biondii Chr16 3 CH_mbi_500 30 55 0.000181366
Magnolia biondii Chr04 3 CH_mbi_678 30 58 0.000934443
Salvia bowleyana GWHASIU00000006 3 CH_sbo_341 25 50 0.0000681247
Salvia bowleyana GWHASIU00000007 3 CH_sbo_382 20 35 0.000141072
Salvia bowleyana GWHASIU00000005 3 CH_sbo_490 28 66 0.000759343
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_1195 18 22 0.000283557
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 4 CH_amhyb_169 18 24 0.000280077
Arabidopsis thaliana Chr5 4 CH_ath_398 30 80 0.0000720951
Arabidopsis thaliana Chr1 4 CH_ath_463 29 79 0.00017174
Arabidopsis thaliana Chr3 4 CH_ath_464 29 78 0.00017174
Camellia sinensis var. sinensis Chr4 4 CH_camsi_621 30 51 0.000152384
Coffea canephora chr3 4 CH_ccan_210 12 66 0.0000442063
Ceratophyllum demersum 2 4 CH_cde_124 26 38 0.000193441
Eutrema salsugineum scaffold_15 4 CH_esa_249 21 29 0.000587651
Fragaria x ananassa Fvb7-1 4 CH_fan_565 11 11 0.000996129
Helianthus annuus HanXRQChr11 4 CH_han_496 29 46 0.0000845861
Magnolia biondii Chr02 4 CH_mbi_329 30 50 0.00000758087
Magnolia biondii Chr16 4 CH_mbi_500 30 55 0.000181366
Magnolia biondii Chr04 4 CH_mbi_678 30 58 0.000934443
Salvia bowleyana GWHASIU00000006 4 CH_sbo_341 25 50 0.0000681247
Salvia bowleyana GWHASIU00000007 4 CH_sbo_382 20 35 0.000141072
Salvia bowleyana GWHASIU00000005 4 CH_sbo_490 28 66 0.000759343
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_1195 18 22 0.000283557

Available child term results

Ontology identifier Description Number of clusters
GO:0000049 tRNA binding 6
GO:0000062 fatty-acyl-CoA binding 4
GO:0000339 RNA cap binding 6
GO:0000400 four-way junction DNA binding 10
GO:0000774 adenyl-nucleotide exchange factor activity 10
GO:0000976 transcription cis-regulatory region binding 6
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 44
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 12
GO:0000987 cis-regulatory region sequence-specific DNA binding 20
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding 4
GO:0002151 G-quadruplex RNA binding 10
GO:0003676 nucleic acid binding 36
GO:0003677 DNA binding 164
GO:0003680 minor groove of adenine-thymine-rich DNA binding 70
GO:0003684 damaged DNA binding 8
GO:0003688 DNA replication origin binding 4
GO:0003690 double-stranded DNA binding 196
GO:0003691 double-stranded telomeric DNA binding 14
GO:0003697 single-stranded DNA binding 20
GO:0003723 RNA binding 10
GO:0003725 double-stranded RNA binding 12
GO:0003729 mRNA binding 16
GO:0003730 mRNA 3'-UTR binding 10
GO:0003743 translation initiation factor activity 4
GO:0003746 translation elongation factor activity 62
GO:0003747 translation release factor activity 10
GO:0005524 ATP binding 56
GO:0005525 GTP binding 14
GO:0005542 folic acid binding 88
GO:0008097 5S rRNA binding 8
GO:0008143 poly(A) binding 6
GO:0008301 DNA binding, bending 4
GO:0008312 7S RNA binding 2
GO:0008494 translation activator activity 4
GO:0010181 FMN binding 84
GO:0010385 double-stranded methylated DNA binding 2
GO:0016168 chlorophyll binding 22
GO:0016208 AMP binding 2
GO:0017069 snRNA binding 2
GO:0017070 U6 snRNA binding 2
GO:0017076 purine nucleotide binding 6
GO:0019001 guanyl nucleotide binding 10
GO:0019003 GDP binding 4
GO:0019237 centromeric DNA binding 8
GO:0019843 rRNA binding 8
GO:0020037 heme binding 108
GO:0030170 pyridoxal phosphate binding 44
GO:0030515 snoRNA binding 2
GO:0030533 triplet codon-amino acid adaptor activity 12
GO:0030620 U2 snRNA binding 6
GO:0030628 pre-mRNA 3'-splice site binding 26
GO:0030976 thiamine pyrophosphate binding 42
GO:0030983 mismatched DNA binding 46
GO:0031419 cobalamin binding 2
GO:0031490 chromatin DNA binding 80
GO:0031492 nucleosomal DNA binding 2
GO:0032142 single guanine insertion binding 2
GO:0032422 purine-rich negative regulatory element binding 12
GO:0032549 ribonucleoside binding 56
GO:0032553 ribonucleotide binding 52
GO:0032555 purine ribonucleotide binding 14
GO:0034336 misfolded RNA binding 4
GO:0034511 U3 snoRNA binding 22
GO:0035197 siRNA binding 10
GO:0035198 miRNA binding 4
GO:0035925 mRNA 3'-UTR AU-rich region binding 2
GO:0036002 pre-mRNA binding 2
GO:0036310 annealing activity 2
GO:0042134 rRNA primary transcript binding 12
GO:0043047 single-stranded telomeric DNA binding 8
GO:0043531 ADP binding 1320
GO:0043546 molybdopterin cofactor binding 4
GO:0043565 sequence-specific DNA binding 36
GO:0046906 tetrapyrrole binding 12
GO:0048027 mRNA 5'-UTR binding 6
GO:0050660 flavin adenine dinucleotide binding 316
GO:0050661 NADP binding 8
GO:0051287 NAD binding 38
GO:0070401 NADP+ binding 18
GO:0070402 NADPH binding 2
GO:0070403 NAD+ binding 12
GO:0070878 primary miRNA binding 2
GO:0070888 E-box binding 38
GO:0071949 FAD binding 174
GO:0080084 5S rDNA binding 8
GO:0097100 supercoiled DNA binding 8
GO:1901265 nucleoside phosphate binding 24
GO:1990247 N6-methyladenosine-containing RNA binding 2
GO:1990825 sequence-specific mRNA binding 4
GO:1990837 sequence-specific double-stranded DNA binding 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001