Functional clusters
Information
- Type Gene Ontology
- Description minor groove of adenine-thymine-rich DNA binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 3 | CH_aar_141 | 3 | 3 | 0.0000619288 |
| Aethionema arabicum | LG-4 | 3 | CH_aar_250 | 3 | 5 | 0.000618003 |
| Brassica carinata | Contig421 | 3 | CH_bca_538 | 4 | 10 | 0.0000631953 |
| Brassica carinata | ChrC05 | 3 | CH_bca_719 | 3 | 3 | 0.000228507 |
| Brassica carinata | ChrB03 | 3 | CH_bca_720 | 3 | 3 | 0.000228507 |
| Brassica napus | A06 | 3 | CH_bna_208 | 4 | 4 | 0.000000253885 |
| Brassica napus | C05 | 3 | CH_bna_505 | 3 | 3 | 0.000207237 |
| Brassica oleracea | C5 | 3 | CH_bol_264 | 3 | 3 | 0.0000700017 |
| Brassica rapa | A06 | 3 | CH_bra_78 | 4 | 4 | 0.000000141408 |
| Camellia sinensis var. sinensis | Chr12 | 3 | CH_camsi_252 | 5 | 17 | 0.000000117204 |
| Capsicum annuum | PGAv.1.6.scaffold208 | 3 | CH_can_281 | 4 | 17 | 0.0000699211 |
| Corylus avellana | 2 | 3 | CH_cav_439 | 3 | 8 | 0.000996223 |
| Carpinus fangiana | Cfa04 | 3 | CH_cfa_293 | 3 | 6 | 0.000394994 |
| Cardamine hirsuta | Chr8 | 3 | CH_chi_355 | 3 | 5 | 0.000510792 |
| Carya illinoinensis | Chr12 | 3 | CH_cil_431 | 3 | 4 | 0.00022755 |
| Daucus carota | DCARv2_Chr2 | 3 | CH_dca_72 | 6 | 15 | 0.000000001868 |
| Lupinus albus | Lalb_Chr09 | 3 | CH_lal_322 | 3 | 3 | 0.000278994 |
| Medicago truncatula | chr5 | 3 | CH_mtr_109 | 7 | 15 | 0.000000000000825544 |
| Medicago truncatula | chr4 | 3 | CH_mtr_388 | 4 | 7 | 0.00000330548 |
| Petunia axillaris | Peaxi162Scf00008 | 3 | CH_pax_114 | 4 | 6 | 0.00000103314 |
| Petunia axillaris | Peaxi162Scf00583 | 3 | CH_pax_46 | 5 | 6 | 0.000000000480243 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_199 | 4 | 10 | 0.0000303009 |
| Pisum sativum | chr3LG5 | 3 | CH_psa_255 | 3 | 3 | 0.000107082 |
| Pisum sativum | chr5LG3 | 3 | CH_psa_334 | 3 | 4 | 0.000427881 |
| Pisum sativum | chr5LG3 | 3 | CH_psa_83 | 7 | 52 | 0.0000000409667 |
| Phaseolus vulgaris | Chr06 | 3 | CH_pvu_262 | 3 | 3 | 0.000086321 |
| Quercus lobata | 8 | 3 | CH_qlo_658 | 4 | 17 | 0.0000199843 |
| Striga asiatica | scaffold227 | 3 | CH_sas_37 | 4 | 9 | 0.00000679478 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_1160 | 3 | 6 | 0.000163543 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_834 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_835 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_836 | 3 | 3 | 0.00000818762 |
| Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_87 | 6 | 11 | 0.0000000000324197 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 3 | CH_tpr_189 | 4 | 13 | 0.000042787 |
| Vanilla planifolia | CM028153.1 | 3 | CH_vpl_219 | 3 | 3 | 0.0000748434 |
| Aethionema arabicum | LG-9 | 4 | CH_aar_141 | 3 | 3 | 0.0000619288 |
| Aethionema arabicum | LG-4 | 4 | CH_aar_250 | 3 | 5 | 0.000618003 |
| Brassica carinata | Contig421 | 4 | CH_bca_538 | 4 | 10 | 0.0000631953 |
| Brassica carinata | ChrC05 | 4 | CH_bca_719 | 3 | 3 | 0.000228507 |
| Brassica carinata | ChrB03 | 4 | CH_bca_720 | 3 | 3 | 0.000228507 |
| Brassica napus | A06 | 4 | CH_bna_208 | 4 | 4 | 0.000000253885 |
| Brassica napus | C05 | 4 | CH_bna_505 | 3 | 3 | 0.000207237 |
| Brassica oleracea | C5 | 4 | CH_bol_264 | 3 | 3 | 0.0000700017 |
| Brassica rapa | A06 | 4 | CH_bra_78 | 4 | 4 | 0.000000141408 |
| Camellia sinensis var. sinensis | Chr12 | 4 | CH_camsi_252 | 5 | 17 | 0.000000117204 |
| Capsicum annuum | PGAv.1.6.scaffold208 | 4 | CH_can_281 | 4 | 17 | 0.0000699211 |
| Corylus avellana | 2 | 4 | CH_cav_439 | 3 | 8 | 0.000996223 |
| Carpinus fangiana | Cfa04 | 4 | CH_cfa_293 | 3 | 6 | 0.000394994 |
| Cardamine hirsuta | Chr8 | 4 | CH_chi_355 | 3 | 5 | 0.000510792 |
| Carya illinoinensis | Chr12 | 4 | CH_cil_431 | 3 | 4 | 0.00022755 |
| Daucus carota | DCARv2_Chr2 | 4 | CH_dca_72 | 6 | 15 | 0.000000001868 |
| Lupinus albus | Lalb_Chr09 | 4 | CH_lal_322 | 3 | 3 | 0.000278994 |
| Medicago truncatula | chr5 | 4 | CH_mtr_109 | 7 | 15 | 0.000000000000825544 |
| Medicago truncatula | chr4 | 4 | CH_mtr_388 | 4 | 7 | 0.00000330548 |
| Petunia axillaris | Peaxi162Scf00008 | 4 | CH_pax_114 | 4 | 6 | 0.00000103314 |
| Petunia axillaris | Peaxi162Scf00583 | 4 | CH_pax_46 | 5 | 6 | 0.000000000480243 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_199 | 4 | 10 | 0.0000303009 |
| Pisum sativum | chr3LG5 | 4 | CH_psa_255 | 3 | 3 | 0.000107082 |
| Pisum sativum | chr5LG3 | 4 | CH_psa_334 | 3 | 4 | 0.000427881 |
| Pisum sativum | chr5LG3 | 4 | CH_psa_83 | 7 | 52 | 0.0000000409667 |
| Phaseolus vulgaris | Chr06 | 4 | CH_pvu_262 | 3 | 3 | 0.000086321 |
| Quercus lobata | 8 | 4 | CH_qlo_658 | 4 | 17 | 0.0000199843 |
| Striga asiatica | scaffold227 | 4 | CH_sas_37 | 4 | 9 | 0.00000679478 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_1160 | 3 | 6 | 0.000163543 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_834 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_835 | 3 | 3 | 0.00000818762 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_836 | 3 | 3 | 0.00000818762 |
| Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_87 | 6 | 11 | 0.0000000000324197 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 4 | CH_tpr_189 | 4 | 13 | 0.000042787 |
| Vanilla planifolia | CM028153.1 | 4 | CH_vpl_219 | 3 | 3 | 0.0000748434 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |