Functional clusters

Information

  • Type Gene Ontology
  • Description RNA binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr7 3 CH_camsi_810 15 70 0.000788205
Capsella rubella scaffold_6 3 CH_cru_254 8 12 0.0001931
Salvia bowleyana GWHASIU00000007 3 CH_sbo_332 7 10 0.0000508286
Sequoiadendron giganteum chr8 3 CH_sgi_1372 5 5 0.000935978
Sequoiadendron giganteum chr5 3 CH_sgi_687 9 13 0.00000045597
Camellia sinensis var. sinensis Chr7 4 CH_camsi_810 15 70 0.000788205
Capsella rubella scaffold_6 4 CH_cru_254 8 12 0.0001931
Salvia bowleyana GWHASIU00000007 4 CH_sbo_332 7 10 0.0000508286
Sequoiadendron giganteum chr8 4 CH_sgi_1372 5 5 0.000935978
Sequoiadendron giganteum chr5 4 CH_sgi_687 9 13 0.00000045597

Available child term results

Ontology identifier Description Number of clusters
GO:0000049 tRNA binding 6
GO:0000339 RNA cap binding 6
GO:0002151 G-quadruplex RNA binding 10
GO:0003725 double-stranded RNA binding 12
GO:0003729 mRNA binding 16
GO:0003730 mRNA 3'-UTR binding 10
GO:0003743 translation initiation factor activity 4
GO:0003746 translation elongation factor activity 62
GO:0003747 translation release factor activity 10
GO:0008097 5S rRNA binding 8
GO:0008143 poly(A) binding 6
GO:0008312 7S RNA binding 2
GO:0017069 snRNA binding 2
GO:0017070 U6 snRNA binding 2
GO:0019843 rRNA binding 8
GO:0030515 snoRNA binding 2
GO:0030533 triplet codon-amino acid adaptor activity 12
GO:0030620 U2 snRNA binding 6
GO:0030628 pre-mRNA 3'-splice site binding 26
GO:0034336 misfolded RNA binding 4
GO:0034511 U3 snoRNA binding 22
GO:0035197 siRNA binding 10
GO:0035198 miRNA binding 4
GO:0035925 mRNA 3'-UTR AU-rich region binding 2
GO:0036002 pre-mRNA binding 2
GO:0042134 rRNA primary transcript binding 12
GO:0048027 mRNA 5'-UTR binding 6
GO:0070878 primary miRNA binding 2
GO:1990247 N6-methyladenosine-containing RNA binding 2
GO:1990825 sequence-specific mRNA binding 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001