Functional clusters
Information
- Type Gene Ontology
- Description ubiquitin protein ligase binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-6 | 3 | CH_aar_182 | 3 | 5 | 0.000165839 |
| Actinidia chinensis | Lachesis_group10 | 3 | CH_ach_99 | 3 | 3 | 0.0000115084 |
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_172 | 3 | 3 | 0.0000191151 |
| Avicennia marina | ScioBoG_3008_HRSCAF_3015 | 3 | CH_ama_46 | 3 | 3 | 0.0000256491 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 3 | CH_arhy_198 | 5 | 7 | 0.000000000482732 |
| Brassica carinata | ChrB03 | 3 | CH_bca_527 | 3 | 4 | 0.0000537173 |
| Corylus avellana | 2 | 3 | CH_cav_427 | 3 | 7 | 0.000800163 |
| Citrus clementina | scaffold_9 | 3 | CH_ccl_146 | 4 | 4 | 0.0000000339105 |
| Capsella rubella | scaffold_6 | 3 | CH_cru_235 | 3 | 4 | 0.000105006 |
| Capsella rubella | scaffold_2 | 3 | CH_cru_50 | 5 | 5 | 0.0000000000210697 |
| Durio zibethinus | NW_019167904.1 | 3 | CH_dzi_189 | 3 | 3 | 0.0000250381 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_233 | 7 | 11 | 0.00000000000152898 |
| Erythranthe guttata | scaffold_14 | 3 | CH_egut_146 | 4 | 4 | 0.0000000237164 |
| Erythranthe guttata | scaffold_7 | 3 | CH_egut_241 | 3 | 3 | 0.0000260548 |
| Fragaria x ananassa | Fvb5-3 | 3 | CH_fan_447 | 3 | 5 | 0.00031911 |
| Fragaria vesca | Fvb5 | 3 | CH_fve_50 | 6 | 10 | 0.00000000000158903 |
| Lotus japonicus | chr4 | 3 | CH_lja_203 | 3 | 4 | 0.0000472233 |
| Magnolia biondii | Chr19 | 3 | CH_mbi_127 | 5 | 9 | 0.00000000124499 |
| Malus domestica | Chr04 | 3 | CH_mdo_252 | 4 | 7 | 0.000000470201 |
| Malus domestica | Chr06 | 3 | CH_mdo_524 | 3 | 5 | 0.000196925 |
| Medicago truncatula | chr5 | 3 | CH_mtr_147 | 7 | 29 | 0.0000000000428269 |
| Medicago truncatula | chr4 | 3 | CH_mtr_381 | 4 | 8 | 0.00000282581 |
| Medicago truncatula | chr7 | 3 | CH_mtr_62 | 10 | 48 | 0.00000000000000263629 |
| Olea europaea | chr17 | 3 | CH_oeu_51 | 4 | 4 | 0.0000000301373 |
| Prunus persica | Pp05 | 3 | CH_ppe_75 | 6 | 8 | 0.000000000000257481 |
| Papaver somniferum | NC_039367.1 | 3 | CH_pso_356 | 5 | 37 | 0.00000581608 |
| Papaver somniferum | NW_020625486.1 | 3 | CH_pso_62 | 7 | 13 | 0.00000000000000974553 |
| Quercus lobata | 3 | 3 | CH_qlo_111 | 10 | 31 | 4.17665e-17 |
| Quercus lobata | 6 | 3 | CH_qlo_509 | 4 | 5 | 0.000000874883 |
| Quercus lobata | CM012294 | 3 | CH_qlo_637 | 4 | 8 | 0.0000122065 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_138 | 6 | 13 | 0.00000000000521117 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_186 | 5 | 10 | 0.00000000132509 |
| Rhododendron simsii | chr02 | 3 | CH_rsi_199 | 5 | 18 | 0.000000108613 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_1016 | 3 | 4 | 0.0000520045 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_81 | 7 | 18 | 0.0000000000155918 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_36 | 7 | 17 | 0.000000000000121399 |
| Selenicereus undatus | Scaffold_33675 | 3 | CH_sun_118 | 5 | 68 | 0.000111232 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 3 | CH_tpr_146 | 4 | 11 | 0.00000749843 |
| Tripterygium wilfordii | NC_052240.1 | 3 | CH_twi_267 | 3 | 5 | 0.000305133 |
| Aethionema arabicum | LG-6 | 4 | CH_aar_182 | 3 | 5 | 0.000165839 |
| Actinidia chinensis | Lachesis_group10 | 4 | CH_ach_99 | 3 | 3 | 0.0000115084 |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_172 | 3 | 3 | 0.0000191151 |
| Avicennia marina | ScioBoG_3008_HRSCAF_3015 | 4 | CH_ama_46 | 3 | 3 | 0.0000256491 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 4 | CH_arhy_198 | 5 | 7 | 0.000000000482732 |
| Brassica carinata | ChrB03 | 4 | CH_bca_527 | 3 | 4 | 0.0000537173 |
| Corylus avellana | 2 | 4 | CH_cav_427 | 3 | 7 | 0.000800163 |
| Citrus clementina | scaffold_9 | 4 | CH_ccl_146 | 4 | 4 | 0.0000000339105 |
| Capsella rubella | scaffold_6 | 4 | CH_cru_235 | 3 | 4 | 0.000105006 |
| Capsella rubella | scaffold_2 | 4 | CH_cru_50 | 5 | 5 | 0.0000000000210697 |
| Durio zibethinus | NW_019167904.1 | 4 | CH_dzi_189 | 3 | 3 | 0.0000250381 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_233 | 7 | 11 | 0.00000000000152898 |
| Erythranthe guttata | scaffold_14 | 4 | CH_egut_146 | 4 | 4 | 0.0000000237164 |
| Erythranthe guttata | scaffold_7 | 4 | CH_egut_241 | 3 | 3 | 0.0000260548 |
| Fragaria x ananassa | Fvb5-3 | 4 | CH_fan_447 | 3 | 5 | 0.00031911 |
| Fragaria vesca | Fvb5 | 4 | CH_fve_50 | 6 | 10 | 0.00000000000158903 |
| Lotus japonicus | chr4 | 4 | CH_lja_203 | 3 | 4 | 0.0000472233 |
| Magnolia biondii | Chr19 | 4 | CH_mbi_127 | 5 | 9 | 0.00000000124499 |
| Malus domestica | Chr04 | 4 | CH_mdo_252 | 4 | 7 | 0.000000470201 |
| Malus domestica | Chr06 | 4 | CH_mdo_524 | 3 | 5 | 0.000196925 |
| Medicago truncatula | chr5 | 4 | CH_mtr_147 | 7 | 29 | 0.0000000000428269 |
| Medicago truncatula | chr4 | 4 | CH_mtr_381 | 4 | 8 | 0.00000282581 |
| Medicago truncatula | chr7 | 4 | CH_mtr_62 | 10 | 48 | 0.00000000000000263629 |
| Olea europaea | chr17 | 4 | CH_oeu_51 | 4 | 4 | 0.0000000301373 |
| Prunus persica | Pp05 | 4 | CH_ppe_75 | 6 | 8 | 0.000000000000257481 |
| Papaver somniferum | NC_039367.1 | 4 | CH_pso_356 | 5 | 37 | 0.00000581608 |
| Papaver somniferum | NW_020625486.1 | 4 | CH_pso_62 | 7 | 13 | 0.00000000000000974553 |
| Quercus lobata | 3 | 4 | CH_qlo_111 | 10 | 31 | 4.17665e-17 |
| Quercus lobata | 6 | 4 | CH_qlo_509 | 4 | 5 | 0.000000874883 |
| Quercus lobata | CM012294 | 4 | CH_qlo_637 | 4 | 8 | 0.0000122065 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_138 | 6 | 13 | 0.00000000000521117 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_186 | 5 | 10 | 0.00000000132509 |
| Rhododendron simsii | chr02 | 4 | CH_rsi_199 | 5 | 18 | 0.000000108613 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_1016 | 3 | 4 | 0.0000520045 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_81 | 7 | 18 | 0.0000000000155918 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_36 | 7 | 17 | 0.000000000000121399 |
| Selenicereus undatus | Scaffold_33675 | 4 | CH_sun_118 | 5 | 68 | 0.000111232 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 4 | CH_tpr_146 | 4 | 11 | 0.00000749843 |
| Tripterygium wilfordii | NC_052240.1 | 4 | CH_twi_267 | 3 | 5 | 0.000305133 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |