Functional clusters

Information

  • Type Gene Ontology
  • Description calcium-dependent phospholipid binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 3 CH_acertr_11 8 11 1.9675e-20
Acer truncatum chr11 3 CH_acertr_76 4 4 0.00000000321663
Actinidia chinensis Lachesis_group20 3 CH_ach_11 6 7 0.0000000000000353765
Actinidia chinensis Lachesis_group0 3 CH_ach_7 7 7 3.15928e-18
Avicennia marina ScioBoG_26180_HRSCAF_26306 3 CH_ama_28 3 3 0.00000133821
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 3 CH_amhyb_32 4 5 0.00000000442758
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 3 CH_arhy_185 5 7 0.000000000154443
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 3 CH_arhy_300 4 7 0.000000419183
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 3 CH_arhy_422 3 3 0.0000190781
Brassica carinata ChrB08 3 CH_bca_143 4 5 0.00000000460928
Brassica napus C09 3 CH_bna_305 3 3 0.00000593295
Beta vulgaris Chr9_EL10_PGA_scaffold8 3 CH_bvu_129 3 3 0.00000467837
Beta vulgaris Chr2_EL10_PGA_scaffold6 3 CH_bvu_41 5 7 0.0000000000222104
Camellia sinensis var. sinensis Chr3 3 CH_camsi_188 5 21 0.00000000781065
Capsicum annuum PGAv.1.6.scaffold305 3 CH_can_230 3 3 0.00000573281
Capsicum annuum PGAv.1.6.scaffold134 3 CH_can_71 5 5 0.00000000000152613
Cicer arietinum L. Ca_LG7_v3 3 CH_car_65 3 4 0.0000103917
Corylus avellana 1 3 CH_cav_191 3 4 0.0000128339
Chara braunii BFEA01000118 3 CH_cbr_31 4 4 0.0000000141232
Coffea canephora chr0 3 CH_ccan_44 5 79 0.000000000645031
Coffea canephora chr0 3 CH_ccan_69 4 34 0.0000000245993
Citrus clementina scaffold_4 3 CH_ccl_205 3 3 0.000000847901
Carya illinoinensis Chr13 3 CH_cil_300 3 3 0.0000188795
Carya illinoinensis Chr08 3 CH_cil_8 15 77 1.2734e-28
Citrullus lanatus CG_Chr05 3 CH_cla_24 4 4 0.0000000014977
Cucumis melo chr10 3 CH_cme_22 7 16 0.00000000000000154059
Chenopodium quinoa C_Quinoa_Scaffold_2185 3 CH_cqu_107 4 4 0.00000000233459
Chenopodium quinoa C_Quinoa_Scaffold_1237 3 CH_cqu_135 4 6 0.0000000349933
Chlamydomonas reinhardtii chromosome_3 3 CH_cre_65 2 2 0.000113733
Cucumis sativus L. chr5 3 CH_csa_40 6 15 0.00000000000136725
Daucus carota DCARv2_Chr7 3 CH_dca_175 3 3 0.00000414906
Davidia involucrata GWHABJS00000005 3 CH_din_100 4 5 0.0000000513988
Davidia involucrata GWHABJS00000002 3 CH_din_203 3 3 0.000015233
Eucalyptus grandis Chr06 3 CH_egr_282 6 23 0.0000000000420783
Erythranthe guttata scaffold_2 3 CH_egut_181 3 3 0.000000668073
Fragaria x ananassa Fvb7-4 3 CH_fan_292 3 3 0.0000150274
Fragaria x ananassa Fvb7-3 3 CH_fan_293 3 3 0.0000150274
Fragaria x ananassa Fvb7-1 3 CH_fan_401 3 5 0.000150158
Fragaria x ananassa Fvb7-2 3 CH_fan_554 3 8 0.000839918
Fragaria vesca Fvb7 3 CH_fve_189 3 4 0.00000458003
Gossypium hirsutum A05 3 CH_ghi_175 4 4 0.00000000377214
Gossypium hirsutum D05 3 CH_ghi_350 3 3 0.00000830981
Glycine max Gm15 3 CH_gma_137 4 5 0.0000000257982
Glycine max Gm13 3 CH_gma_61 5 7 0.0000000000554991
Gossypium raimondii Chr09 3 CH_gra_166 3 3 0.00000417762
Helianthus annuus HanXRQChr15 3 CH_han_356 3 3 0.00000297913
Lupinus albus Lalb_Chr24 3 CH_lal_185 3 3 0.00000549518
Lotus japonicus chr3 3 CH_lja_18 6 6 0.00000000000000114179
Lactuca sativa Lsat_1_v8_lg_8 3 CH_lsa_107 5 9 0.000000000221631
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_185 4 7 0.000000126117
Magnolia biondii Chr05 3 CH_mbi_294 3 3 0.0000024059
Magnolia biondii Chr19 3 CH_mbi_400 3 6 0.0000480776
Malus domestica Chr07 3 CH_mdo_104 5 11 0.000000000188385
Malus domestica Chr12 3 CH_mdo_201 4 8 0.000000083675
Malus domestica Chr02 3 CH_mdo_349 3 4 0.0000132837
Manihot esculenta Chromosome04 3 CH_mes_211 3 3 0.00000254492
Manihot esculenta Chromosome11 3 CH_mes_212 3 3 0.00000254492
Medicago truncatula chr3 3 CH_mtr_254 4 6 0.0000000276204
Medicago truncatula chr6 3 CH_mtr_394 3 3 0.00000448449
Medicago truncatula chr8 3 CH_mtr_85 6 10 0.0000000000000557847
Olea europaea chr3 3 CH_oeu_118 3 4 0.00000777673
Prunus persica Pp02 3 CH_ppe_233 3 3 0.00000183639
Pisum sativum chr4LG4 3 CH_psa_77 4 6 0.0000000382014
Phaseolus vulgaris Chr11 3 CH_pvu_83 4 4 0.0000000028322
Quercus lobata 4 3 CH_qlo_412 4 6 0.0000000547961
Quercus lobata 3 3 CH_qlo_522 5 40 0.00000116311
Quercus lobata 3 3 CH_qlo_641 4 19 0.0000140825
Rosa chinensis RcHm_v2.0_Chr1 3 CH_rch_120 7 38 0.00000000000100553
Rosa chinensis RcHm_v2.0_Chr3 3 CH_rch_276 4 8 0.000000117667
Rhododendron simsii chr08 3 CH_rsi_146 4 4 0.00000000390622
Rhododendron simsii chr07 3 CH_rsi_69 6 7 0.00000000000000683053
Salvia bowleyana GWHASIU00000003 3 CH_sbo_268 4 39 0.00000762955
Salix brachista GWHAAZH00000001 3 CH_sbr_169 3 3 0.0000021681
Simmondsia chinensis GWHAASQ00000010 3 CH_sci_90 3 3 0.00000179427
Sechium edule LG04 3 CH_sed_132 3 3 0.00000519165
Sechium edule LG11 3 CH_sed_149 3 4 0.0000207581
Sequoiadendron giganteum chr2 3 CH_sgi_724 3 4 0.00000119594
Solanum lycopersicum SL4.0ch10 3 CH_sly_111 4 4 0.00000000144384
Solanum lycopersicum SL4.0ch01 3 CH_sly_134 4 5 0.00000000721678
Selaginella moellendorffii scaffold_16 3 CH_smo_196 2 2 0.000933707
Schrenkiella parvula ch4-6 3 CH_spa_21 4 4 0.000000000724876
Solanum pennellii Spenn-ch01 3 CH_spe_73 4 4 0.00000000036037
Solanum tuberosum ST4.03ch01 3 CH_stu_234 3 3 0.000000472706
Trochodendron aralioides group7 3 CH_tar_142 4 7 0.000000286993
Trochodendron aralioides group0 3 CH_tar_258 3 4 0.000049716
Theobroma cacao Chromosome_10 3 CH_tca_260 4 30 0.0000581976
Trifolium pratense Tp57577_TGAC_v2_LG6 3 CH_tpr_133 3 3 0.00000391093
Trifolium pratense Tp57577_TGAC_v2_scaf_506 3 CH_tpr_51 4 4 0.00000000177642
Tripterygium wilfordii NC_052252.1 3 CH_twi_40 5 7 0.00000000000666121
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_3 11 13 6.51108e-28
Vigna mungo CM024076.1 3 CH_vmu_76 4 8 0.0000000566464
Vitis vinifera chrUn 3 CH_vvi_10 13 18 5.84647e-32
Vitis vinifera chr13_random 3 CH_vvi_359 3 5 0.000351786
Acer truncatum chr2 4 CH_acertr_11 8 11 1.9675e-20
Acer truncatum chr11 4 CH_acertr_76 4 4 0.00000000321663
Actinidia chinensis Lachesis_group20 4 CH_ach_11 6 7 0.0000000000000353765
Actinidia chinensis Lachesis_group0 4 CH_ach_7 7 7 3.15928e-18
Avicennia marina ScioBoG_26180_HRSCAF_26306 4 CH_ama_28 3 3 0.00000133821
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 4 CH_amhyb_32 4 5 0.00000000442758
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 4 CH_arhy_185 5 7 0.000000000154443
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 4 CH_arhy_300 4 7 0.000000419183
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 4 CH_arhy_422 3 3 0.0000190781
Brassica carinata ChrB08 4 CH_bca_143 4 5 0.00000000460928
Brassica napus C09 4 CH_bna_305 3 3 0.00000593295
Beta vulgaris Chr9_EL10_PGA_scaffold8 4 CH_bvu_129 3 3 0.00000467837
Beta vulgaris Chr2_EL10_PGA_scaffold6 4 CH_bvu_41 5 7 0.0000000000222104
Camellia sinensis var. sinensis Chr3 4 CH_camsi_188 5 21 0.00000000781065
Capsicum annuum PGAv.1.6.scaffold305 4 CH_can_230 3 3 0.00000573281
Capsicum annuum PGAv.1.6.scaffold134 4 CH_can_71 5 5 0.00000000000152613
Cicer arietinum L. Ca_LG7_v3 4 CH_car_65 3 4 0.0000103917
Corylus avellana 1 4 CH_cav_191 3 4 0.0000128339
Chara braunii BFEA01000118 4 CH_cbr_31 4 4 0.0000000141232
Coffea canephora chr0 4 CH_ccan_44 5 79 0.000000000645031
Coffea canephora chr0 4 CH_ccan_69 4 34 0.0000000245993
Citrus clementina scaffold_4 4 CH_ccl_205 3 3 0.000000847901
Carya illinoinensis Chr13 4 CH_cil_300 3 3 0.0000188795
Carya illinoinensis Chr08 4 CH_cil_8 15 77 1.2734e-28
Citrullus lanatus CG_Chr05 4 CH_cla_24 4 4 0.0000000014977
Cucumis melo chr10 4 CH_cme_22 7 16 0.00000000000000154059
Chenopodium quinoa C_Quinoa_Scaffold_2185 4 CH_cqu_107 4 4 0.00000000233459
Chenopodium quinoa C_Quinoa_Scaffold_1237 4 CH_cqu_135 4 6 0.0000000349933
Chlamydomonas reinhardtii chromosome_3 4 CH_cre_65 2 2 0.000113733
Cucumis sativus L. chr5 4 CH_csa_40 6 15 0.00000000000136725
Daucus carota DCARv2_Chr7 4 CH_dca_175 3 3 0.00000414906
Davidia involucrata GWHABJS00000005 4 CH_din_100 4 5 0.0000000513988
Davidia involucrata GWHABJS00000002 4 CH_din_203 3 3 0.000015233
Eucalyptus grandis Chr06 4 CH_egr_282 6 23 0.0000000000420783
Erythranthe guttata scaffold_2 4 CH_egut_181 3 3 0.000000668073
Fragaria x ananassa Fvb7-4 4 CH_fan_292 3 3 0.0000150274
Fragaria x ananassa Fvb7-3 4 CH_fan_293 3 3 0.0000150274
Fragaria x ananassa Fvb7-1 4 CH_fan_401 3 5 0.000150158
Fragaria x ananassa Fvb7-2 4 CH_fan_554 3 8 0.000839918
Fragaria vesca Fvb7 4 CH_fve_189 3 4 0.00000458003
Gossypium hirsutum A05 4 CH_ghi_175 4 4 0.00000000377214
Gossypium hirsutum D05 4 CH_ghi_350 3 3 0.00000830981
Glycine max Gm15 4 CH_gma_137 4 5 0.0000000257982
Glycine max Gm13 4 CH_gma_61 5 7 0.0000000000554991
Gossypium raimondii Chr09 4 CH_gra_166 3 3 0.00000417762
Helianthus annuus HanXRQChr15 4 CH_han_356 3 3 0.00000297913
Lupinus albus Lalb_Chr24 4 CH_lal_185 3 3 0.00000549518
Lotus japonicus chr3 4 CH_lja_18 6 6 0.00000000000000114179
Lactuca sativa Lsat_1_v8_lg_8 4 CH_lsa_107 5 9 0.000000000221631
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_185 4 7 0.000000126117
Magnolia biondii Chr05 4 CH_mbi_294 3 3 0.0000024059
Magnolia biondii Chr19 4 CH_mbi_400 3 6 0.0000480776
Malus domestica Chr07 4 CH_mdo_104 5 11 0.000000000188385
Malus domestica Chr12 4 CH_mdo_201 4 8 0.000000083675
Malus domestica Chr02 4 CH_mdo_349 3 4 0.0000132837
Manihot esculenta Chromosome04 4 CH_mes_211 3 3 0.00000254492
Manihot esculenta Chromosome11 4 CH_mes_212 3 3 0.00000254492
Medicago truncatula chr3 4 CH_mtr_254 4 6 0.0000000276204
Medicago truncatula chr6 4 CH_mtr_394 3 3 0.00000448449
Medicago truncatula chr8 4 CH_mtr_85 6 10 0.0000000000000557847
Olea europaea chr3 4 CH_oeu_118 3 4 0.00000777673
Prunus persica Pp02 4 CH_ppe_233 3 3 0.00000183639
Pisum sativum chr4LG4 4 CH_psa_77 4 6 0.0000000382014
Phaseolus vulgaris Chr11 4 CH_pvu_83 4 4 0.0000000028322
Quercus lobata 4 4 CH_qlo_412 4 6 0.0000000547961
Quercus lobata 3 4 CH_qlo_522 5 40 0.00000116311
Quercus lobata 3 4 CH_qlo_641 4 19 0.0000140825
Rosa chinensis RcHm_v2.0_Chr1 4 CH_rch_120 7 38 0.00000000000100553
Rosa chinensis RcHm_v2.0_Chr3 4 CH_rch_276 4 8 0.000000117667
Rhododendron simsii chr08 4 CH_rsi_146 4 4 0.00000000390622
Rhododendron simsii chr07 4 CH_rsi_69 6 7 0.00000000000000683053
Salvia bowleyana GWHASIU00000003 4 CH_sbo_268 4 39 0.00000762955
Salix brachista GWHAAZH00000001 4 CH_sbr_169 3 3 0.0000021681
Simmondsia chinensis GWHAASQ00000010 4 CH_sci_90 3 3 0.00000179427
Sechium edule LG04 4 CH_sed_132 3 3 0.00000519165
Sechium edule LG11 4 CH_sed_149 3 4 0.0000207581
Sequoiadendron giganteum chr2 4 CH_sgi_724 3 4 0.00000119594
Solanum lycopersicum SL4.0ch10 4 CH_sly_111 4 4 0.00000000144384
Solanum lycopersicum SL4.0ch01 4 CH_sly_134 4 5 0.00000000721678
Selaginella moellendorffii scaffold_16 4 CH_smo_196 2 2 0.000933707
Schrenkiella parvula ch4-6 4 CH_spa_21 4 4 0.000000000724876
Solanum pennellii Spenn-ch01 4 CH_spe_73 4 4 0.00000000036037
Solanum tuberosum ST4.03ch01 4 CH_stu_234 3 3 0.000000472706
Trochodendron aralioides group7 4 CH_tar_142 4 7 0.000000286993
Trochodendron aralioides group0 4 CH_tar_258 3 4 0.000049716
Theobroma cacao Chromosome_10 4 CH_tca_260 4 30 0.0000581976
Trifolium pratense Tp57577_TGAC_v2_LG6 4 CH_tpr_133 3 3 0.00000391093
Trifolium pratense Tp57577_TGAC_v2_scaf_506 4 CH_tpr_51 4 4 0.00000000177642
Tripterygium wilfordii NC_052252.1 4 CH_twi_40 5 7 0.00000000000666121
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_3 11 13 6.51108e-28
Vigna mungo CM024076.1 4 CH_vmu_76 4 8 0.0000000566464
Vitis vinifera chrUn 4 CH_vvi_10 13 18 5.84647e-32
Vitis vinifera chr13_random 4 CH_vvi_359 3 5 0.000351786

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001