Functional clusters
Information
- Type Gene Ontology
- Description protein domain specific binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 3 | CH_aar_229 | 3 | 3 | 0.000495817 |
| Aquilegia oxysepala | CHR04 | 3 | CH_aox_279 | 3 | 3 | 0.000483528 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 3 | CH_arhy_192 | 6 | 8 | 0.000000000274166 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 3 | CH_arhy_351 | 5 | 11 | 0.00000198624 |
| Citrus clementina | scaffold_6 | 3 | CH_ccl_60 | 7 | 7 | 0.0000000000000476554 |
| Carya illinoinensis | Chr10 | 3 | CH_cil_74 | 8 | 11 | 0.0000000000000337557 |
| Daucus carota | DCARv2_Chr8 | 3 | CH_dca_99 | 5 | 6 | 0.0000000345504 |
| Gossypium hirsutum | D08 | 3 | CH_ghi_490 | 4 | 8 | 0.000187397 |
| Gossypium raimondii | Chr04 | 3 | CH_gra_233 | 4 | 8 | 0.000115941 |
| Manihot esculenta | Chromosome09 | 3 | CH_mes_441 | 3 | 3 | 0.000932111 |
| Medicago truncatula | chr7 | 3 | CH_mtr_288 | 5 | 8 | 0.000000114983 |
| Papaver somniferum | NC_039362.1 | 3 | CH_pso_26 | 12 | 33 | 1.41406e-19 |
| Papaver somniferum | NC_039360.1 | 3 | CH_pso_671 | 4 | 12 | 0.000791734 |
| Populus trichocarpa | Chr16 | 3 | CH_ptr_17 | 12 | 13 | 8.54864e-25 |
| Phaseolus vulgaris | Chr08 | 3 | CH_pvu_194 | 4 | 5 | 0.00001384 |
| Quercus lobata | 7 | 3 | CH_qlo_510 | 4 | 4 | 0.000000876792 |
| Salix brachista | GWHAAZH00000004 | 3 | CH_sbr_113 | 5 | 6 | 0.0000000388609 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_779 | 4 | 5 | 0.00000334096 |
| Trochodendron aralioides | group6 | 3 | CH_tar_475 | 3 | 3 | 0.00067898 |
| Aethionema arabicum | LG-1 | 4 | CH_aar_229 | 3 | 3 | 0.000495817 |
| Aquilegia oxysepala | CHR04 | 4 | CH_aox_279 | 3 | 3 | 0.000483528 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 4 | CH_arhy_192 | 6 | 8 | 0.000000000274166 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 4 | CH_arhy_351 | 5 | 11 | 0.00000198624 |
| Citrus clementina | scaffold_6 | 4 | CH_ccl_60 | 7 | 7 | 0.0000000000000476554 |
| Carya illinoinensis | Chr10 | 4 | CH_cil_74 | 8 | 11 | 0.0000000000000337557 |
| Daucus carota | DCARv2_Chr8 | 4 | CH_dca_99 | 5 | 6 | 0.0000000345504 |
| Gossypium hirsutum | D08 | 4 | CH_ghi_490 | 4 | 8 | 0.000187397 |
| Gossypium raimondii | Chr04 | 4 | CH_gra_233 | 4 | 8 | 0.000115941 |
| Manihot esculenta | Chromosome09 | 4 | CH_mes_441 | 3 | 3 | 0.000932111 |
| Medicago truncatula | chr7 | 4 | CH_mtr_288 | 5 | 8 | 0.000000114983 |
| Papaver somniferum | NC_039362.1 | 4 | CH_pso_26 | 12 | 33 | 1.41406e-19 |
| Papaver somniferum | NC_039360.1 | 4 | CH_pso_671 | 4 | 12 | 0.000791734 |
| Populus trichocarpa | Chr16 | 4 | CH_ptr_17 | 12 | 13 | 8.54864e-25 |
| Phaseolus vulgaris | Chr08 | 4 | CH_pvu_194 | 4 | 5 | 0.00001384 |
| Quercus lobata | 7 | 4 | CH_qlo_510 | 4 | 4 | 0.000000876792 |
| Salix brachista | GWHAAZH00000004 | 4 | CH_sbr_113 | 5 | 6 | 0.0000000388609 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_779 | 4 | 5 | 0.00000334096 |
| Trochodendron aralioides | group6 | 4 | CH_tar_475 | 3 | 3 | 0.00067898 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |