Functional clusters

Information

  • Type Gene Ontology
  • Description calcium ion binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 3 CH_acertr_2 17 19 4.79953e-31
Arabidopsis lyrata scaffold_6 3 CH_aly_305 4 5 0.000568276
Avicennia marina ScioBoG_102837_HRSCAF_103074 3 CH_ama_41 5 5 0.0000185107
Aquilegia oxysepala CHR01 3 CH_aox_172 4 4 0.0000669409
Aquilegia oxysepala CHR05 3 CH_aox_62 6 7 0.0000000233365
Camellia sinensis var. sinensis Chr9 3 CH_camsi_311 7 16 0.000000626589
Cannabis sativa NC_044372.1 3 CH_cansat_20 13 23 1.06666e-18
Capsicum annuum PGAv.1.6.scaffold742 3 CH_can_333 6 19 0.000134316
Capsicum annuum PGAv.1.6.scaffold371 3 CH_can_85 7 7 0.0000000000412319
Citrus clementina scaffold_1 3 CH_ccl_23 15 23 9.653e-22
Citrus clementina scaffold_5 3 CH_ccl_325 4 4 0.000140705
Carpinus fangiana Cfa07 3 CH_cfa_12 15 22 5.71163e-23
Carya illinoinensis Chr05 3 CH_cil_186 8 16 0.0000000592918
Carya illinoinensis Chr15 3 CH_cil_201 7 11 0.000000151144
Carya illinoinensis Chr15 3 CH_cil_23 17 28 1.2424e-22
Carya illinoinensis Chr16 3 CH_cil_308 5 6 0.000025673
Citrullus lanatus CG_Chr08 3 CH_cla_17 9 13 0.00000000000196573
Cucumis melo chr03 3 CH_cme_26 10 14 0.00000000000000474639
Chenopodium quinoa C_Quinoa_Scaffold_4082 3 CH_cqu_325 8 35 0.00003947
Chenopodium quinoa C_Quinoa_Scaffold_2370 3 CH_cqu_66 8 9 0.000000000018628
Cucumis sativus L. chr2 3 CH_csa_22 11 14 7.47364e-17
Daucus carota DCARv2_Chr9 3 CH_dca_150 6 9 0.00000103838
Erigeron canadensis Conyza_canadensis_scaffold:3 3 CH_eca_176 5 6 0.00000284375
Erigeron canadensis Conyza_canadensis_scaffold:1 3 CH_eca_209 5 7 0.00000990044
Erigeron canadensis Conyza_canadensis_scaffold:5 3 CH_eca_343 5 11 0.000213235
Erigeron canadensis Conyza_canadensis_scaffold:1 3 CH_eca_385 4 5 0.000373277
Eucalyptus grandis Chr06 3 CH_egr_453 6 8 0.000000177027
Eucalyptus grandis Chr08 3 CH_egr_732 4 4 0.000113648
Erythranthe guttata scaffold_14 3 CH_egut_138 6 6 0.000000015066
Erythranthe guttata scaffold_14 3 CH_egut_421 4 5 0.000928318
Fragaria x ananassa Fvb3-4 3 CH_fan_436 4 4 0.000243304
Fragaria vesca Fvb2 3 CH_fve_177 5 6 0.0000022632
Fragaria vesca Fvb4 3 CH_fve_336 6 25 0.000385167
Gossypium hirsutum A06 3 CH_ghi_148 7 7 0.000000000350508
Gossypium hirsutum D02 3 CH_ghi_322 5 5 0.00000438664
Gossypium hirsutum D06 3 CH_ghi_59 10 10 2.4758e-16
Glycine max Gm14 3 CH_gma_407 5 9 0.00027732
Gossypium raimondii Chr05 3 CH_gra_157 5 5 0.00000252367
Gossypium raimondii Chr09 3 CH_gra_290 4 4 0.000274462
Gossypium raimondii Chr10 3 CH_gra_44 9 10 0.000000000000173806
Magnolia biondii Chr02 3 CH_mbi_8 16 21 1.0675e-27
Manihot esculenta Chromosome04 3 CH_mes_117 11 33 0.000000000201225
Manihot esculenta Chromosome13 3 CH_mes_347 4 4 0.000241496
Manihot esculenta Chromosome05 3 CH_mes_62 9 9 0.0000000000000153221
Manihot esculenta Chromosome18 3 CH_mes_75 10 15 0.000000000000399113
Manihot esculenta Chromosome02 3 CH_mes_78 9 11 0.000000000000829007
Marchantia polymorpha scaffold_7 3 CH_mpo_114 4 6 0.00044497
Marchantia polymorpha scaffold_42 3 CH_mpo_50 5 6 0.00000111628
Medicago truncatula chr1 3 CH_mtr_131 10 26 0.0000000000127011
Medicago truncatula chr3 3 CH_mtr_229 7 12 0.0000000100078
Medicago truncatula chr5 3 CH_mtr_646 4 5 0.000311504
Medicago truncatula chr2 3 CH_mtr_647 4 5 0.000311504
Nelumbo nucifera chr1 3 CH_nnu_164 5 7 0.0000237757
Nelumbo nucifera chr1 3 CH_nnu_65 10 38 0.0000000114184
Nelumbo nucifera chr1 3 CH_nnu_86 6 7 0.0000000610847
Nicotiana tabacum Nitab4.5_0000686 3 CH_nta_36 6 10 0.000000379876
Olea europaea chr14 3 CH_oeu_35 8 14 0.000000000952088
Olea europaea chr23 3 CH_oeu_96 7 18 0.00000134143
Petunia axillaris Peaxi162Scf01132 3 CH_pax_316 4 5 0.000589604
Prunus persica Pp01 3 CH_ppe_56 9 9 0.00000000000000352687
Pisum sativum chr6LG2 3 CH_psa_75 7 14 0.0000000286047
Papaver somniferum NC_039363.1 3 CH_pso_65 10 17 0.0000000000000144737
Populus trichocarpa Chr02 3 CH_ptr_104 8 9 0.0000000000198962
Populus trichocarpa Chr14 3 CH_ptr_224 6 8 0.000000698084
Populus trichocarpa Chr19 3 CH_ptr_75 9 10 0.000000000000206388
Quercus lobata 9 3 CH_qlo_1023 4 5 0.000846741
Quercus lobata CM012294 3 CH_qlo_25 19 30 2.50399e-28
Rhododendron simsii chr10 3 CH_rsi_427 4 4 0.000210936
Rhododendron simsii chr07 3 CH_rsi_71 9 9 0.000000000000012038
Rhododendron simsii chr02 3 CH_rsi_77 14 43 0.000000000000038821
Salvia bowleyana GWHASIU00000005 3 CH_sbo_388 4 5 0.000162625
Salix brachista GWHAAZH00000014 3 CH_sbr_112 7 10 0.000000035998
Salix brachista GWHAAZH00000019 3 CH_sbr_51 13 40 0.00000000000250035
Sechium edule LG10 3 CH_sed_20 13 18 1.05515e-18
Sechium edule LG11 3 CH_sed_28 10 11 0.00000000000000177616
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_152 13 32 3.47151e-17
Sequoiadendron giganteum chr1 3 CH_sgi_342 9 20 0.0000000000238463
Solanum lycopersicum SL4.0ch06 3 CH_sly_552 4 5 0.000614745
Solanum pennellii Spenn-ch04 3 CH_spe_150 5 5 0.000000248615
Solanum tuberosum ST4.03ch04 3 CH_stu_228 5 5 0.000000412594
Trochodendron aralioides group5 3 CH_tar_180 5 5 0.00000169458
Trochodendron aralioides group1 3 CH_tar_247 5 7 0.0000350732
Theobroma cacao Chromosome_8 3 CH_tca_12 15 26 2.12821e-21
Theobroma cacao Chromosome_8 3 CH_tca_242 5 8 0.0000375613
Trifolium pratense Tp57577_TGAC_v2_LG3 3 CH_tpr_234 4 4 0.0000893871
Vanilla planifolia CM028158.1 3 CH_vpl_125 9 45 0.00000298092
Vitis vinifera chr1 3 CH_vvi_72 8 9 0.00000000000302649
Zea mays 1 3 CH_zma_14 16 42 3.60295e-17
Acer truncatum chr13 4 CH_acertr_2 17 19 4.79953e-31
Arabidopsis lyrata scaffold_6 4 CH_aly_305 4 5 0.000568276
Avicennia marina ScioBoG_102837_HRSCAF_103074 4 CH_ama_41 5 5 0.0000185107
Aquilegia oxysepala CHR01 4 CH_aox_172 4 4 0.0000669409
Aquilegia oxysepala CHR05 4 CH_aox_62 6 7 0.0000000233365
Camellia sinensis var. sinensis Chr9 4 CH_camsi_311 7 16 0.000000626589
Cannabis sativa NC_044372.1 4 CH_cansat_20 13 23 1.06666e-18
Capsicum annuum PGAv.1.6.scaffold742 4 CH_can_333 6 19 0.000134316
Capsicum annuum PGAv.1.6.scaffold371 4 CH_can_85 7 7 0.0000000000412319
Citrus clementina scaffold_1 4 CH_ccl_23 15 23 9.653e-22
Citrus clementina scaffold_5 4 CH_ccl_325 4 4 0.000140705
Carpinus fangiana Cfa07 4 CH_cfa_12 15 22 5.71163e-23
Carya illinoinensis Chr05 4 CH_cil_186 8 16 0.0000000592918
Carya illinoinensis Chr15 4 CH_cil_201 7 11 0.000000151144
Carya illinoinensis Chr15 4 CH_cil_23 17 28 1.2424e-22
Carya illinoinensis Chr16 4 CH_cil_308 5 6 0.000025673
Citrullus lanatus CG_Chr08 4 CH_cla_17 9 13 0.00000000000196573
Cucumis melo chr03 4 CH_cme_26 10 14 0.00000000000000474639
Chenopodium quinoa C_Quinoa_Scaffold_4082 4 CH_cqu_325 8 35 0.00003947
Chenopodium quinoa C_Quinoa_Scaffold_2370 4 CH_cqu_66 8 9 0.000000000018628
Cucumis sativus L. chr2 4 CH_csa_22 11 14 7.47364e-17
Daucus carota DCARv2_Chr9 4 CH_dca_150 6 9 0.00000103838
Erigeron canadensis Conyza_canadensis_scaffold:3 4 CH_eca_176 5 6 0.00000284375
Erigeron canadensis Conyza_canadensis_scaffold:1 4 CH_eca_209 5 7 0.00000990044
Erigeron canadensis Conyza_canadensis_scaffold:5 4 CH_eca_343 5 11 0.000213235
Erigeron canadensis Conyza_canadensis_scaffold:1 4 CH_eca_385 4 5 0.000373277
Eucalyptus grandis Chr06 4 CH_egr_453 6 8 0.000000177027
Eucalyptus grandis Chr08 4 CH_egr_732 4 4 0.000113648
Erythranthe guttata scaffold_14 4 CH_egut_138 6 6 0.000000015066
Erythranthe guttata scaffold_14 4 CH_egut_421 4 5 0.000928318
Fragaria x ananassa Fvb3-4 4 CH_fan_436 4 4 0.000243304
Fragaria vesca Fvb2 4 CH_fve_177 5 6 0.0000022632
Fragaria vesca Fvb4 4 CH_fve_336 6 25 0.000385167
Gossypium hirsutum A06 4 CH_ghi_148 7 7 0.000000000350508
Gossypium hirsutum D02 4 CH_ghi_322 5 5 0.00000438664
Gossypium hirsutum D06 4 CH_ghi_59 10 10 2.4758e-16
Glycine max Gm14 4 CH_gma_407 5 9 0.00027732
Gossypium raimondii Chr05 4 CH_gra_157 5 5 0.00000252367
Gossypium raimondii Chr09 4 CH_gra_290 4 4 0.000274462
Gossypium raimondii Chr10 4 CH_gra_44 9 10 0.000000000000173806
Magnolia biondii Chr02 4 CH_mbi_8 16 21 1.0675e-27
Manihot esculenta Chromosome04 4 CH_mes_117 11 33 0.000000000201225
Manihot esculenta Chromosome13 4 CH_mes_347 4 4 0.000241496
Manihot esculenta Chromosome05 4 CH_mes_62 9 9 0.0000000000000153221
Manihot esculenta Chromosome18 4 CH_mes_75 10 15 0.000000000000399113
Manihot esculenta Chromosome02 4 CH_mes_78 9 11 0.000000000000829007
Marchantia polymorpha scaffold_7 4 CH_mpo_114 4 6 0.00044497
Marchantia polymorpha scaffold_42 4 CH_mpo_50 5 6 0.00000111628
Medicago truncatula chr1 4 CH_mtr_131 10 26 0.0000000000127011
Medicago truncatula chr3 4 CH_mtr_229 7 12 0.0000000100078
Medicago truncatula chr5 4 CH_mtr_646 4 5 0.000311504
Medicago truncatula chr2 4 CH_mtr_647 4 5 0.000311504
Nelumbo nucifera chr1 4 CH_nnu_164 5 7 0.0000237757
Nelumbo nucifera chr1 4 CH_nnu_65 10 38 0.0000000114184
Nelumbo nucifera chr1 4 CH_nnu_86 6 7 0.0000000610847
Nicotiana tabacum Nitab4.5_0000686 4 CH_nta_36 6 10 0.000000379876
Olea europaea chr14 4 CH_oeu_35 8 14 0.000000000952088
Olea europaea chr23 4 CH_oeu_96 7 18 0.00000134143
Petunia axillaris Peaxi162Scf01132 4 CH_pax_316 4 5 0.000589604
Prunus persica Pp01 4 CH_ppe_56 9 9 0.00000000000000352687
Pisum sativum chr6LG2 4 CH_psa_75 7 14 0.0000000286047
Papaver somniferum NC_039363.1 4 CH_pso_65 10 17 0.0000000000000144737
Populus trichocarpa Chr02 4 CH_ptr_104 8 9 0.0000000000198962
Populus trichocarpa Chr14 4 CH_ptr_224 6 8 0.000000698084
Populus trichocarpa Chr19 4 CH_ptr_75 9 10 0.000000000000206388
Quercus lobata 9 4 CH_qlo_1023 4 5 0.000846741
Quercus lobata CM012294 4 CH_qlo_25 19 30 2.50399e-28
Rhododendron simsii chr10 4 CH_rsi_427 4 4 0.000210936
Rhododendron simsii chr07 4 CH_rsi_71 9 9 0.000000000000012038
Rhododendron simsii chr02 4 CH_rsi_77 14 43 0.000000000000038821
Salvia bowleyana GWHASIU00000005 4 CH_sbo_388 4 5 0.000162625
Salix brachista GWHAAZH00000014 4 CH_sbr_112 7 10 0.000000035998
Salix brachista GWHAAZH00000019 4 CH_sbr_51 13 40 0.00000000000250035
Sechium edule LG10 4 CH_sed_20 13 18 1.05515e-18
Sechium edule LG11 4 CH_sed_28 10 11 0.00000000000000177616
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_152 13 32 3.47151e-17
Sequoiadendron giganteum chr1 4 CH_sgi_342 9 20 0.0000000000238463
Solanum lycopersicum SL4.0ch06 4 CH_sly_552 4 5 0.000614745
Solanum pennellii Spenn-ch04 4 CH_spe_150 5 5 0.000000248615
Solanum tuberosum ST4.03ch04 4 CH_stu_228 5 5 0.000000412594
Trochodendron aralioides group5 4 CH_tar_180 5 5 0.00000169458
Trochodendron aralioides group1 4 CH_tar_247 5 7 0.0000350732
Theobroma cacao Chromosome_8 4 CH_tca_12 15 26 2.12821e-21
Theobroma cacao Chromosome_8 4 CH_tca_242 5 8 0.0000375613
Trifolium pratense Tp57577_TGAC_v2_LG3 4 CH_tpr_234 4 4 0.0000893871
Vanilla planifolia CM028158.1 4 CH_vpl_125 9 45 0.00000298092
Vitis vinifera chr1 4 CH_vvi_72 8 9 0.00000000000302649
Zea mays 1 4 CH_zma_14 16 42 3.60295e-17

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001