Functional clusters

Information

  • Type Gene Ontology
  • Description transcription cis-regulatory region binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Citrullus lanatus CG_Chr01 3 CH_cla_167 13 72 0.000847146
Cucumis melo chr08 3 CH_cme_193 13 77 0.00015356
Sequoiadendron giganteum chr10 3 CH_sgi_909 5 5 0.0000302239
Citrullus lanatus CG_Chr01 4 CH_cla_167 13 72 0.000847146
Cucumis melo chr08 4 CH_cme_193 13 77 0.00015356
Sequoiadendron giganteum chr10 4 CH_sgi_909 5 5 0.0000302239

Available child term results

Ontology identifier Description Number of clusters
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 44
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 12
GO:0000987 cis-regulatory region sequence-specific DNA binding 20
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding 4
GO:0032422 purine-rich negative regulatory element binding 12
GO:0070888 E-box binding 38

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001