Functional clusters
Information
- Type Gene Ontology
- Description oxygen binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 3 | CH_acertr_224 | 3 | 4 | 0.00000655861 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 3 | CH_arhy_119 | 5 | 5 | 0.000000000000320148 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 3 | CH_arhy_378 | 3 | 3 | 0.00000309229 |
| Coffea canephora | chr2 | 3 | CH_ccan_143 | 3 | 18 | 0.00000450505 |
| Chlamydomonas reinhardtii | chromosome_16 | 3 | CH_cre_15 | 6 | 45 | 0.00000000318059 |
| Eucalyptus grandis | Chr09 | 3 | CH_egr_539 | 3 | 3 | 0.00000187036 |
| Glycine max | Gm10 | 3 | CH_gma_75 | 4 | 4 | 0.000000000223929 |
| Medicago truncatula | chr5 | 3 | CH_mtr_313 | 5 | 41 | 0.00000024588 |
| Nicotiana tabacum | Nitab4.5_0000250 | 3 | CH_nta_144 | 2 | 2 | 0.000658364 |
| Olea europaea | chr2 | 3 | CH_oeu_116 | 3 | 6 | 0.00000717728 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_6 | 7 | 7 | 3.0867e-20 |
| Phaseolus vulgaris | Chr07 | 3 | CH_pvu_51 | 5 | 6 | 0.00000000000103855 |
| Rhododendron simsii | chr13 | 3 | CH_rsi_132 | 4 | 4 | 0.000000000266058 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 3 | CH_tpr_186 | 3 | 5 | 0.0000390797 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 3 | CH_tpr_69 | 4 | 6 | 0.0000000266265 |
| Vitis vinifera | chr18 | 3 | CH_vvi_388 | 3 | 7 | 0.000536641 |
| Zea mays | 9 | 3 | CH_zma_157 | 3 | 7 | 0.00000768282 |
| Acer truncatum | chr5 | 4 | CH_acertr_224 | 3 | 4 | 0.00000655861 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 4 | CH_arhy_119 | 5 | 5 | 0.000000000000320148 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 4 | CH_arhy_378 | 3 | 3 | 0.00000309229 |
| Coffea canephora | chr2 | 4 | CH_ccan_143 | 3 | 18 | 0.00000450505 |
| Chlamydomonas reinhardtii | chromosome_16 | 4 | CH_cre_15 | 6 | 45 | 0.00000000318059 |
| Eucalyptus grandis | Chr09 | 4 | CH_egr_539 | 3 | 3 | 0.00000187036 |
| Glycine max | Gm10 | 4 | CH_gma_75 | 4 | 4 | 0.000000000223929 |
| Medicago truncatula | chr5 | 4 | CH_mtr_313 | 5 | 41 | 0.00000024588 |
| Nicotiana tabacum | Nitab4.5_0000250 | 4 | CH_nta_144 | 2 | 2 | 0.000658364 |
| Olea europaea | chr2 | 4 | CH_oeu_116 | 3 | 6 | 0.00000717728 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_6 | 7 | 7 | 3.0867e-20 |
| Phaseolus vulgaris | Chr07 | 4 | CH_pvu_51 | 5 | 6 | 0.00000000000103855 |
| Rhododendron simsii | chr13 | 4 | CH_rsi_132 | 4 | 4 | 0.000000000266058 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 4 | CH_tpr_186 | 3 | 5 | 0.0000390797 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 4 | CH_tpr_69 | 4 | 6 | 0.0000000266265 |
| Vitis vinifera | chr18 | 4 | CH_vvi_388 | 3 | 7 | 0.000536641 |
| Zea mays | 9 | 4 | CH_zma_157 | 3 | 7 | 0.00000768282 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |