Functional clusters
Information
- Type Gene Ontology
- Description translation elongation factor activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_160 | 3 | 3 | 0.0000115736 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 3 | CH_amhyb_45 | 4 | 6 | 0.0000000820528 |
| Brassica carinata | ChrB01 | 3 | CH_bca_857 | 3 | 5 | 0.000541363 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 3 | CH_bvu_88 | 4 | 8 | 0.000000283133 |
| Citrus clementina | scaffold_8 | 3 | CH_ccl_327 | 3 | 5 | 0.000155254 |
| Carya illinoinensis | Chr13 | 3 | CH_cil_294 | 3 | 3 | 0.0000168567 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3966 | 3 | CH_cqu_60 | 6 | 8 | 0.00000000000106065 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2487 | 3 | CH_cqu_89 | 6 | 16 | 0.000000000301421 |
| Daucus carota | DCARv2_Chr4 | 3 | CH_dca_210 | 3 | 3 | 0.0000247723 |
| Erythranthe guttata | scaffold_4 | 3 | CH_egut_255 | 3 | 4 | 0.0000422889 |
| Gossypium hirsutum | D04 | 3 | CH_ghi_413 | 3 | 3 | 0.0000637834 |
| Gossypium hirsutum | A04 | 3 | CH_ghi_517 | 3 | 4 | 0.000254954 |
| Lonicera japonica | GWHAAZE00000001 | 3 | CH_lonja_528 | 3 | 7 | 0.000488503 |
| Manihot esculenta | Chromosome15 | 3 | CH_mes_249 | 3 | 3 | 0.0000163602 |
| Manihot esculenta | Chromosome03 | 3 | CH_mes_283 | 3 | 4 | 0.0000654028 |
| Marchantia polymorpha | scaffold_145 | 3 | CH_mpo_35 | 4 | 4 | 0.0000000241916 |
| Medicago truncatula | chr6 | 3 | CH_mtr_340 | 5 | 23 | 0.000000771484 |
| Medicago truncatula | chr1 | 3 | CH_mtr_719 | 3 | 6 | 0.000669412 |
| Nicotiana tabacum | Nitab4.5_0000022 | 3 | CH_nta_103 | 3 | 9 | 0.000181682 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_144 | 4 | 5 | 0.00000011562 |
| Punica granatum | NC_045134.1 | 3 | CH_pgr_173 | 4 | 6 | 0.00000111776 |
| Punica granatum | NC_045128.1 | 3 | CH_pgr_361 | 3 | 5 | 0.000601868 |
| Physcomitrium patens | Chr01 | 3 | CH_ppa_104 | 3 | 3 | 0.0000695005 |
| Papaver somniferum | NC_039365.1 | 3 | CH_pso_440 | 3 | 4 | 0.0000462129 |
| Populus trichocarpa | Chr08 | 3 | CH_ptr_411 | 3 | 6 | 0.000449668 |
| Selaginella moellendorffii | scaffold_1 | 3 | CH_smo_94 | 3 | 4 | 0.0000355523 |
| Selenicereus undatus | Scaffold_33680 | 3 | CH_sun_175 | 3 | 6 | 0.00032003 |
| Tarenaya hassleriana | NW_010965696.1 | 3 | CH_tha_92 | 3 | 3 | 0.0000437919 |
| Utricularia gibba | unitig_0 | 3 | CH_ugi_25 | 4 | 6 | 0.000000148598 |
| Zea mays | 6 | 3 | CH_zma_145 | 4 | 5 | 0.000003331 |
| Zea mays | 8 | 3 | CH_zma_318 | 4 | 14 | 0.000657323 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_160 | 3 | 3 | 0.0000115736 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 4 | CH_amhyb_45 | 4 | 6 | 0.0000000820528 |
| Brassica carinata | ChrB01 | 4 | CH_bca_857 | 3 | 5 | 0.000541363 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 4 | CH_bvu_88 | 4 | 8 | 0.000000283133 |
| Citrus clementina | scaffold_8 | 4 | CH_ccl_327 | 3 | 5 | 0.000155254 |
| Carya illinoinensis | Chr13 | 4 | CH_cil_294 | 3 | 3 | 0.0000168567 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3966 | 4 | CH_cqu_60 | 6 | 8 | 0.00000000000106065 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2487 | 4 | CH_cqu_89 | 6 | 16 | 0.000000000301421 |
| Daucus carota | DCARv2_Chr4 | 4 | CH_dca_210 | 3 | 3 | 0.0000247723 |
| Erythranthe guttata | scaffold_4 | 4 | CH_egut_255 | 3 | 4 | 0.0000422889 |
| Gossypium hirsutum | D04 | 4 | CH_ghi_413 | 3 | 3 | 0.0000637834 |
| Gossypium hirsutum | A04 | 4 | CH_ghi_517 | 3 | 4 | 0.000254954 |
| Lonicera japonica | GWHAAZE00000001 | 4 | CH_lonja_528 | 3 | 7 | 0.000488503 |
| Manihot esculenta | Chromosome15 | 4 | CH_mes_249 | 3 | 3 | 0.0000163602 |
| Manihot esculenta | Chromosome03 | 4 | CH_mes_283 | 3 | 4 | 0.0000654028 |
| Marchantia polymorpha | scaffold_145 | 4 | CH_mpo_35 | 4 | 4 | 0.0000000241916 |
| Medicago truncatula | chr6 | 4 | CH_mtr_340 | 5 | 23 | 0.000000771484 |
| Medicago truncatula | chr1 | 4 | CH_mtr_719 | 3 | 6 | 0.000669412 |
| Nicotiana tabacum | Nitab4.5_0000022 | 4 | CH_nta_103 | 3 | 9 | 0.000181682 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_144 | 4 | 5 | 0.00000011562 |
| Punica granatum | NC_045134.1 | 4 | CH_pgr_173 | 4 | 6 | 0.00000111776 |
| Punica granatum | NC_045128.1 | 4 | CH_pgr_361 | 3 | 5 | 0.000601868 |
| Physcomitrium patens | Chr01 | 4 | CH_ppa_104 | 3 | 3 | 0.0000695005 |
| Papaver somniferum | NC_039365.1 | 4 | CH_pso_440 | 3 | 4 | 0.0000462129 |
| Populus trichocarpa | Chr08 | 4 | CH_ptr_411 | 3 | 6 | 0.000449668 |
| Selaginella moellendorffii | scaffold_1 | 4 | CH_smo_94 | 3 | 4 | 0.0000355523 |
| Selenicereus undatus | Scaffold_33680 | 4 | CH_sun_175 | 3 | 6 | 0.00032003 |
| Tarenaya hassleriana | NW_010965696.1 | 4 | CH_tha_92 | 3 | 3 | 0.0000437919 |
| Utricularia gibba | unitig_0 | 4 | CH_ugi_25 | 4 | 6 | 0.000000148598 |
| Zea mays | 6 | 4 | CH_zma_145 | 4 | 5 | 0.000003331 |
| Zea mays | 8 | 4 | CH_zma_318 | 4 | 14 | 0.000657323 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |