Functional clusters

Information

  • Type MapMan
  • Description External stimuli response

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Fragaria x ananassa Fvb3-4 1 CH_fan_489 10 60 0.000308803
Fragaria vesca Fvb3 1 CH_fve_154 13 69 0.000000273012
Oryza sativa ssp. japonica chr05 1 CH_osa_285 9 79 0.000166826
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_749 9 58 0.000587367
Salvia bowleyana GWHASIU00000006 1 CH_sbo_314 5 10 0.000109171
Trochodendron aralioides group2 1 CH_tar_464 4 4 0.000493423
Fragaria x ananassa Fvb3-4 2 CH_fan_489 10 60 0.000308803
Fragaria vesca Fvb3 2 CH_fve_154 13 69 0.000000273012
Oryza sativa ssp. japonica chr05 2 CH_osa_285 9 79 0.000166826
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_749 9 58 0.000587367
Salvia bowleyana GWHASIU00000006 2 CH_sbo_314 5 10 0.000109171
Trochodendron aralioides group2 2 CH_tar_464 4 4 0.000493423

Available child term results

Ontology identifier Description Number of clusters
26.1 External stimuli response.light 2
26.1.1.1 External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY) 12
26.1.1.2 External stimuli response.light.red/far red light.PHY-A translocation regulator (FHY1/FHL) 3
26.1.1.3.2 External stimuli response.light.red/far red light.substrate adaptor module of CUL4-DDB1 ubiquitin ligase complex.regulator component SPA 2
26.1.1.4 External stimuli response.light.red/far red light.substrate adaptor of phytochrome signalling SCF ubiquitin ligase (EID1) 2
26.1.1.5 External stimuli response.light.red/far red light.substrate adaptor of phytochrome signalling SCF ubiquitin ligase (AFR) 4
26.1.1.6 External stimuli response.light.red/far red light.transcriptional regulator (FRS) 22
26.1.1.7 External stimuli response.light.red/far red light.transcriptional regulator (PIF) 2
26.1.1.8.1 External stimuli response.light.red/far red light.phytochrome-mediated agravitropism.regulator (GIL1) 12
26.1.2.1.1 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.cryptochrome photoreceptor (CRY) 12
26.1.2.1.2 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.transcriptional regulator (CIB) 6
26.1.2.1.3 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.cryptochrome-signalling inhibitor (BIC) 14
26.1.2.2 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception 2
26.1.2.2.1 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor 4
26.1.2.2.2 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.regulator kinase (BLUS) 4
26.1.2.2.3 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin signalling factor (PKS) 14
26.1.2.2.4 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin signalling factor (RPT2) 4
26.1.2.3.1 External stimuli response.light.UV-A/blue light.zeitlupe-mediated photoperception.substrate adaptor of SCF E3 ubiquitin ligase complex (ADO) 16
26.1.2.3.2 External stimuli response.light.UV-A/blue light.zeitlupe-mediated photoperception.regulator protein (GIGANTEA) 8
26.1.2.4.1 External stimuli response.light.UV-A/blue light.PLP-mediated photoperception.photoreceptor (PLP) 2
26.1.3.1 External stimuli response.light.UV-B light.photoreceptor (UVR8) 2
26.10 External stimuli response.symbiont 2
26.10.1 External stimuli response.symbiont.symbiosis signalling pathway 6
26.10.1.1 External stimuli response.symbiont.symbiosis signalling pathway.LysM receptor kinase (NFR1/LYK3) 20
26.10.1.10 External stimuli response.symbiont.symbiosis signalling pathway.symbiosis factor (VAPYRIN) 1
26.10.1.11 External stimuli response.symbiont.symbiosis signalling pathway.infection-specific kinase (RINRK) 4
26.10.1.2 External stimuli response.symbiont.symbiosis signalling pathway.LysM receptor kinase (NFR5/NFP) 2
26.10.1.4 External stimuli response.symbiont.symbiosis signalling pathway.calcium cation channel (DMI1/Pollux/Castor) 2
26.10.1.5.1 External stimuli response.symbiont.symbiosis signalling pathway.CCaMK-IPD3 kinase complex.component CCaMK 4
26.10.1.5.2 External stimuli response.symbiont.symbiosis signalling pathway.CCaMK-IPD3 kinase complex.component IPD3/CYCLOPS 10
26.10.1.6.1 External stimuli response.symbiont.symbiosis signalling pathway.NSP1-NSP2 nodulation initiation complex.component NSP1 6
26.10.1.6.2 External stimuli response.symbiont.symbiosis signalling pathway.NSP1-NSP2 nodulation initiation complex.component NSP2 10
26.10.1.8 External stimuli response.symbiont.symbiosis signalling pathway.transcription factor (NIN) 2
26.10.2.1 External stimuli response.symbiont.arbuscule branching.GRAS transcription factor (RAM1) 2
26.10.2.2 External stimuli response.symbiont.arbuscule branching.RAM1-dependent transcription factor (WRI5) 6
26.10.2.4 External stimuli response.symbiont.arbuscule branching.transcription factor (MIG1) 77
26.10.3.1 External stimuli response.symbiont.lipid biosynthesis.palmitoyl-ACP thioesterase (FatM) 2
26.10.3.2 External stimuli response.symbiont.lipid biosynthesis.glycerol-3-phosphate acyl transferase (RAM2) 4
26.10.4.1 External stimuli response.symbiont.solute transport.lipid transporter (STR) 2
26.10.4.2 External stimuli response.symbiont.solute transport.phosphate transporter (PT4) 22
26.11 External stimuli response.virus 6
26.11.1.1 External stimuli response.virus.virus movement.plasmodesmal protein (PDLP) 13
26.11.2 External stimuli response.virus.tobamovirus multiplication 6
26.11.2.1 External stimuli response.virus.tobamovirus multiplication.replication host factor (TOM1) 6
26.11.2.2 External stimuli response.virus.tobamovirus multiplication.replication host factor (TOM2A) 6
26.11.2.3 External stimuli response.virus.tobamovirus multiplication.replication host factor (TOM2B) 2
26.11.2.4 External stimuli response.virus.tobamovirus multiplication.small GTPase (ARL8) 12
26.11.3.1 External stimuli response.virus.virus infection.susceptibility factor (EXA1) 16
26.11.3.2 External stimuli response.virus.virus infection.resistance factor (BTR1) 4
26.12.1 External stimuli response.multi-stress.regulatory protein (TSPO) 2
26.2.1.1 External stimuli response.carbon dioxide.sensing and signalling.bicarbonate signal transducer (RHC1) 7
26.2.1.3 External stimuli response.carbon dioxide.sensing and signalling.signal transducer kinase (OST1) 2
26.3.1.2 External stimuli response.gravity.sensing and signalling.signalling protein factor (LAZY) 4
26.3.1.3 External stimuli response.gravity.sensing and signalling.regulatory protein factor (RLD) 2
26.3.1.4 External stimuli response.gravity.sensing and signalling.transcription factor (SHR) 4
26.3.1.5 External stimuli response.gravity.sensing and signalling.transcription factor (SCR) 4
26.3.1.7 External stimuli response.gravity.sensing and signalling.signalling protein factor (ARG1) 12
26.4 External stimuli response.temperature 4
26.4.1.1 External stimuli response.temperature.sensing and signalling.temperature sensor protein (CNGC2) 20
26.4.2.1 External stimuli response.temperature.heat response.transcriptional regulator (HsfA1) 4
26.4.2.2 External stimuli response.temperature.heat response.monogalactosyldiacylglycerol lipase (HIL1) 12
26.4.2.3 External stimuli response.temperature.heat response.cytosolic chaperone (Hsp101) 10
26.4.2.4 External stimuli response.temperature.heat response.organellar chaperone (Clp-p/Clp-m) 6
26.4.3.2 External stimuli response.temperature.cold response.cold-responsive mRNA chaperone (CSD) 12
26.4.3.3 External stimuli response.temperature.cold response.cold-responsive protein kinase (CRPK) 8
26.4.3.4.1 External stimuli response.temperature.cold response.ICE-CBF cold acclimation transcriptional cascade.transcription factor (ICE1/2) 4
26.4.3.4.2 External stimuli response.temperature.cold response.ICE-CBF cold acclimation transcriptional cascade.transcription factor (CBF/DREB1) 50
26.6.1.1.1 External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.SOS3-SOS2 signalling.calcium-dependent SOS2 activator (SOS3) 10
26.6.1.1.3 External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.SOS3-SOS2 signalling.calcium-dependent regulatory protein (SCaBP8/CBL10) 14
26.6.1.2 External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.sodium:proton antiporter (SOS1) 20
26.6.1.3 External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.pyridoxal kinase (SOS4/SNO1) 2
26.6.1.4 External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.regulatory factor (SOS5) 2
26.6.2.1 External stimuli response.salinity.gibberellin-abscisic acid signalling pathways crosstalk.transcription factor (DELLA) 6
26.6.2.2 External stimuli response.salinity.gibberellin-abscisic acid signalling pathways crosstalk.ubiquitin protein ligase (XERICO) 6
26.7.1.1 External stimuli response.toxic compounds.heavy metal.metallothionein 74
26.7.2.1 External stimuli response.toxic compounds.arsenic.arsenate reductase (ACR2) 6
26.7.2.2 External stimuli response.toxic compounds.arsenic.arsenate reductase (HAC) 24
26.7.2.3.1 External stimuli response.toxic compounds.arsenic.glutathione-mediated detoxification.phytochelatin synthase (PCS) 93
26.7.2.3.2 External stimuli response.toxic compounds.arsenic.glutathione-mediated detoxification.class lambda glutathione S-transferase 100
26.7.2.4.1 External stimuli response.toxic compounds.arsenic.vacuolar sequestration.glutathione S-conjugate transporter 72
26.8.1 External stimuli response.damage.elicitor peptide precursor (proPEP) 63
26.8.2 External stimuli response.damage.Pep-elicitor peptide receptor kinase (PEPR) 29
26.9 External stimuli response.pathogen 10
26.9.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network 2
26.9.1.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response 4
26.9.1.1.1.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response.FLS2-BAK1 flagellin receptor complex.flagellin receptor protein kinase component (FLS2) 24
26.9.1.1.1.2 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response.FLS2-BAK1 flagellin receptor complex.co-receptor kinase component (BAK1) 41
26.9.1.1.1.3 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response.FLS2-BAK1 flagellin receptor complex.dynamically associated protein kinase (BIK1) 2
26.9.1.2.1.2 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.fungal elicitor response.CERK1-LYK5 chitin receptor complex.component CERK1 45
26.9.1.2.2 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.fungal elicitor response.chitin receptor protein kinase (CEBiP) 12
26.9.1.3.1 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.nematode elicitor response.receptor protein kinase (NILR) 16
26.9.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network 19
26.9.2.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity 14
26.9.2.1.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.effector receptor (NLR) 540
26.9.2.1.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (ADR) 28
26.9.2.1.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.TNL-mediated effector-triggered immunity.regulatory protein (NRG) 101
26.9.2.2.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.CC-NLR-type effector receptor (RPM1) 18
26.9.2.2.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.RPM1-interacting factor (RIN4) 8
26.9.2.2.4 External stimuli response.pathogen.effector-triggered immunity (ETI) network.RIN4-RPM1 immune signalling.RIN4-regulatory factor (GCN4) 12
26.9.2.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.regulatory protein (NDR1) 39
26.9.2.4 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers 2
26.9.2.4.1 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component EDS1 54
26.9.2.4.2 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component PAD4 20
26.9.2.4.3 External stimuli response.pathogen.effector-triggered immunity (ETI) network.EDS1-PAD4/SAG101 signalling heterodimers.component SAG101 58
26.9.2.5 External stimuli response.pathogen.effector-triggered immunity (ETI) network.co-regulatory protein (RAR1) 4
26.9.2.6 External stimuli response.pathogen.effector-triggered immunity (ETI) network.immunity suppressor protein (SOBER/TIPSY) 24
26.9.3 External stimuli response.pathogen.defense mechanisms 6
26.9.3.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR) 2
26.9.3.1.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (NPR1) 12
26.9.3.1.2 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).NPR1-interactive transcription factor (TGA) 2
26.9.3.1.4 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (CBP60/SARD) 82
26.9.3.1.5.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.aminotransferase (ALD1) 2
26.9.3.1.5.2 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.cyclodeaminase (SARD4) 10
26.9.3.1.5.3 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate N-hydroxylase (FMO1) 8
26.9.3.1.5.4 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate oxidase (SOX) 25
26.9.3.2 External stimuli response.pathogen.defense mechanisms.defensin activities 2
26.9.3.2.1 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF1) 59
26.9.3.2.2 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF2) 108
26.9.3.2.3 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF3) 87
26.9.3.3.1 External stimuli response.pathogen.defense mechanisms.WRKY33-dependent plant immunity.transcription factor (WRKY33) 2
26.9.3.3.2 External stimuli response.pathogen.defense mechanisms.WRKY33-dependent plant immunity.WRKY33-activating protein (SIB) 18
26.9.3.4 External stimuli response.pathogen.defense mechanisms.pathogen polygalacturonase inhibitor (PGIP) 143

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001