Functional clusters
Information
- Type MapMan
- Description External stimuli response.damage.elicitor peptide precursor (proPEP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_154 | 3 | 4 | 0.000000914792 |
| Aquilegia oxysepala | CHR06 | 1 | CH_aox_8 | 6 | 7 | 3.659e-18 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_149 | 3 | 4 | 0.000000275766 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_60 | 4 | 8 | 0.000000000345596 |
| Brassica carinata | ChrC03 | 1 | CH_bca_170 | 4 | 8 | 0.00000000794659 |
| Brassica carinata | ChrC01 | 1 | CH_bca_347 | 3 | 3 | 0.000000664186 |
| Brassica carinata | ChrB02 | 1 | CH_bca_348 | 3 | 3 | 0.000000664186 |
| Brassica napus | A06 | 1 | CH_bna_278 | 3 | 3 | 0.00000104487 |
| Brassica napus | C03 | 1 | CH_bna_279 | 3 | 3 | 0.00000104487 |
| Brassica oleracea | C3 | 1 | CH_bol_121 | 3 | 3 | 0.000000352573 |
| Brassica rapa | A06 | 1 | CH_bra_116 | 3 | 3 | 0.00000100635 |
| Cannabis sativa | NC_044373.1 | 1 | CH_cansat_376 | 2 | 5 | 0.000656577 |
| Cardamine hirsuta | Chr8 | 1 | CH_chi_70 | 4 | 6 | 0.000000000520048 |
| Capsella rubella | scaffold_6 | 1 | CH_cru_161 | 3 | 3 | 0.000000449069 |
| Capsella rubella | scaffold_8 | 1 | CH_cru_63 | 4 | 4 | 0.0000000000820908 |
| Eutrema salsugineum | scaffold_6 | 1 | CH_esa_335 | 2 | 2 | 0.000761499 |
| Eutrema salsugineum | scaffold_2 | 1 | CH_esa_83 | 3 | 3 | 0.0000000869853 |
| Fragaria x ananassa | Fvb2-1 | 1 | CH_fan_218 | 3 | 5 | 0.00000186911 |
| Fragaria x ananassa | Fvb2-2 | 1 | CH_fan_269 | 3 | 7 | 0.00000654077 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_142 | 3 | 3 | 0.000000104115 |
| Fragaria vesca | Fvb1 | 1 | CH_fve_163 | 3 | 4 | 0.000000416421 |
| Glycine max | Gm04 | 1 | CH_gma_621 | 2 | 2 | 0.00079707 |
| Nelumbo nucifera | chr5 | 1 | CH_nnu_83 | 3 | 3 | 0.000000028517 |
| Olea europaea | chr18 | 1 | CH_oeu_412 | 2 | 2 | 0.000800683 |
| Petunia axillaris | Peaxi162Scf00267 | 1 | CH_pax_271 | 2 | 2 | 0.000211067 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_414 | 2 | 2 | 0.000782452 |
| Papaver somniferum | NC_039363.1 | 1 | CH_pso_591 | 2 | 2 | 0.000337849 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_592 | 2 | 2 | 0.000337849 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_295 | 3 | 10 | 0.000000286029 |
| Schrenkiella parvula | ch6-6 | 1 | CH_spa_100 | 3 | 3 | 0.000000325462 |
| Schrenkiella parvula | ch2-4 | 1 | CH_spa_101 | 3 | 3 | 0.000000325462 |
| Tarenaya hassleriana | NW_010960188.1 | 1 | CH_tha_46 | 3 | 3 | 0.0000000292727 |
| Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_154 | 3 | 4 | 0.000000914792 |
| Aquilegia oxysepala | CHR06 | 2 | CH_aox_8 | 6 | 7 | 3.659e-18 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_149 | 3 | 4 | 0.000000275766 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_60 | 4 | 8 | 0.000000000345596 |
| Brassica carinata | ChrC03 | 2 | CH_bca_170 | 4 | 8 | 0.00000000794659 |
| Brassica carinata | ChrC01 | 2 | CH_bca_347 | 3 | 3 | 0.000000664186 |
| Brassica carinata | ChrB02 | 2 | CH_bca_348 | 3 | 3 | 0.000000664186 |
| Brassica oleracea | C3 | 2 | CH_bol_121 | 3 | 3 | 0.000000352573 |
| Brassica rapa | A06 | 2 | CH_bra_116 | 3 | 3 | 0.00000100635 |
| Cannabis sativa | NC_044373.1 | 2 | CH_cansat_376 | 2 | 5 | 0.000656577 |
| Cardamine hirsuta | Chr8 | 2 | CH_chi_70 | 4 | 6 | 0.000000000520048 |
| Capsella rubella | scaffold_6 | 2 | CH_cru_161 | 3 | 3 | 0.000000449069 |
| Capsella rubella | scaffold_8 | 2 | CH_cru_63 | 4 | 4 | 0.0000000000820908 |
| Eutrema salsugineum | scaffold_6 | 2 | CH_esa_335 | 2 | 2 | 0.000761499 |
| Eutrema salsugineum | scaffold_2 | 2 | CH_esa_83 | 3 | 3 | 0.0000000869853 |
| Fragaria x ananassa | Fvb2-1 | 2 | CH_fan_218 | 3 | 5 | 0.00000186911 |
| Fragaria x ananassa | Fvb2-2 | 2 | CH_fan_269 | 3 | 7 | 0.00000654077 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_142 | 3 | 3 | 0.000000104115 |
| Fragaria vesca | Fvb1 | 2 | CH_fve_163 | 3 | 4 | 0.000000416421 |
| Glycine max | Gm04 | 2 | CH_gma_621 | 2 | 2 | 0.00079707 |
| Lotus japonicus | chr1 | 2 | CH_lja_415 | 2 | 2 | 0.000715077 |
| Nelumbo nucifera | chr5 | 2 | CH_nnu_83 | 3 | 3 | 0.000000028517 |
| Olea europaea | chr18 | 2 | CH_oeu_412 | 2 | 2 | 0.000800683 |
| Petunia axillaris | Peaxi162Scf00267 | 2 | CH_pax_271 | 2 | 2 | 0.000211067 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_414 | 2 | 2 | 0.000782452 |
| Papaver somniferum | NC_039363.1 | 2 | CH_pso_591 | 2 | 2 | 0.000337849 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_592 | 2 | 2 | 0.000337849 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_295 | 3 | 10 | 0.000000286029 |
| Schrenkiella parvula | ch6-6 | 2 | CH_spa_100 | 3 | 3 | 0.000000325462 |
| Schrenkiella parvula | ch2-4 | 2 | CH_spa_101 | 3 | 3 | 0.000000325462 |
| Tarenaya hassleriana | NW_010960188.1 | 2 | CH_tha_46 | 3 | 3 | 0.0000000292727 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |