Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Coffea canephora chr4 1 CH_ccan_23 6 49 0.000000000000229093
Coffea canephora chr4 2 CH_ccan_23 6 49 0.000000000000229093

Available child term results

Ontology identifier Description Number of clusters
26.9.3.1.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (NPR1) 12
26.9.3.1.2 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).NPR1-interactive transcription factor (TGA) 2
26.9.3.1.4 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (CBP60/SARD) 82
26.9.3.1.5.1 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.aminotransferase (ALD1) 2
26.9.3.1.5.2 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.cyclodeaminase (SARD4) 10
26.9.3.1.5.3 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate N-hydroxylase (FMO1) 8
26.9.3.1.5.4 External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate oxidase (SOX) 25

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001