Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.pathogen.defense mechanisms.pathogen polygalacturonase inhibitor (PGIP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 1 CH_aly_379 2 2 0.000396027
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 1 CH_amhyb_38 3 3 0.000000106286
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_140 4 4 0.0000000000575611
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_141 4 4 0.0000000000575611
Amborella trichopoda AmTr_v1.0_scaffold00022 1 CH_atr_67 3 3 0.00000000946662
Brassica carinata ChrC05 1 CH_bca_111 4 5 0.000000000567851
Brassica carinata ChrC06 1 CH_bca_346 3 3 0.000000664186
Brassica carinata ChrB01 1 CH_bca_566 3 8 0.0000371686
Brassica carinata ChrC06 1 CH_bca_85 4 4 0.000000000113586
Brassica napus C05 1 CH_bna_106 4 5 0.00000000101752
Brassica napus A10 1 CH_bna_32 5 5 0.0000000000000377599
Brassica napus A03 1 CH_bna_367 3 5 0.0000104455
Brassica napus A05 1 CH_bna_87 4 4 0.000000000203536
Brassica napus C09 1 CH_bna_88 4 4 0.000000000203536
Brassica oleracea C9 1 CH_bol_40 4 4 0.00000000007491
Brassica oleracea C5 1 CH_bol_49 4 5 0.0000000003745
Brassica rapa A05 1 CH_bra_112 3 3 0.000000790707
Brassica rapa A10 1 CH_bra_24 5 5 0.000000000000032794
Brassica rapa A03 1 CH_bra_50 4 4 0.000000000169738
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_114 3 3 0.000000863699
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_41 5 14 0.0000000000887668
Camellia sinensis var. sinensis Chr6 1 CH_camsi_463 3 15 0.0000143411
Camellia sinensis var. sinensis Chr13 1 CH_camsi_833 2 2 0.000458547
Cannabis sativa NC_044379.1 1 CH_cansat_12 8 20 2.08933e-22
Cicer arietinum L. Ca_LG3_v3 1 CH_car_235 2 2 0.00023349
Coffea canephora chr6 1 CH_ccan_31 4 26 0.00000000000325836
Cardamine hirsuta Chr6 1 CH_chi_25 5 5 0.00000000000000102737
Citrullus lanatus CG_Chr04 1 CH_cla_157 2 3 0.000266123
Chenopodium quinoa C_Quinoa_Scaffold_3792 1 CH_cqu_62 5 8 0.0000000000245971
Chenopodium quinoa C_Quinoa_Scaffold_2876 1 CH_cqu_8 11 17 2.07945e-30
Capsella rubella scaffold_6 1 CH_cru_70 4 6 0.000000000263813
Daucus carota DCARv2_Chr5 1 CH_dca_437 2 2 0.000637775
Daucus carota DCARv2_Chr4 1 CH_dca_438 2 2 0.000637775
Eucalyptus grandis Chr01 1 CH_egr_245 4 7 0.0000000000210508
Erythranthe guttata scaffold_9 1 CH_egut_234 3 4 0.0000090957
Erythranthe guttata scaffold_10 1 CH_egut_24 7 10 2.41659e-18
Eutrema salsugineum scaffold_2 1 CH_esa_73 3 3 0.0000000347941
Fragaria x ananassa Fvb6-4 1 CH_fan_436 2 2 0.000185036
Fragaria x ananassa Fvb6-1 1 CH_fan_437 2 2 0.000185036
Fragaria vesca Fvb6 1 CH_fve_327 2 3 0.000176725
Glycine max Gm05 1 CH_gma_198 3 4 0.000000726018
Glycine max Gm08 1 CH_gma_232 3 5 0.00000181486
Lotus japonicus chr4 1 CH_lja_139 3 3 0.000000268461
Lotus japonicus chr1 1 CH_lja_66 4 5 0.000000000191961
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_506 2 2 0.000514007
Manihot esculenta Chromosome09 1 CH_mes_301 2 2 0.0000610631
Medicago truncatula chr4 1 CH_mtr_474 3 5 0.0000245237
Medicago truncatula chr7 1 CH_mtr_73 6 8 0.0000000000000020007
Nelumbo nucifera chr2 1 CH_nnu_2 18 30 1.47373e-49
Nelumbo nucifera chr7 1 CH_nnu_241 3 3 0.00000834121
Nelumbo nucifera chr7 1 CH_nnu_264 3 4 0.000033351
Nicotiana tabacum Nitab4.5_0000016 1 CH_nta_130 2 3 0.000329164
Oryza sativa ssp. japonica chr05 1 CH_osa_44 4 5 0.000000000033143
Petunia axillaris Peaxi162Scf00285 1 CH_pax_8 6 7 2.71589e-19
Punica granatum NC_045131.1 1 CH_pgr_20 5 7 0.00000000000000499363
Pisum sativum chr7LG7 1 CH_psa_157 4 29 0.00000332339
Papaver somniferum NC_039364.1 1 CH_pso_153 4 10 0.00000000237449
Populus trichocarpa Chr06 1 CH_ptr_449 2 2 0.000346801
Phaseolus vulgaris Chr02 1 CH_pvu_63 4 4 0.00000000001785
Quercus lobata 7 1 CH_qlo_689 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_491 2 2 0.0000398653
Rhododendron simsii chr03 1 CH_rsi_48 5 6 7.80455e-16
Salvia bowleyana GWHASIU00000003 1 CH_sbo_189 3 3 0.000000888078
Salvia bowleyana GWHASIU00000002 1 CH_sbo_92 4 5 0.00000000101
Salix brachista GWHAAZH00000006 1 CH_sbr_301 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000019 1 CH_sci_51 3 3 0.0000000434974
Sechium edule LG14 1 CH_sed_10 7 10 9.97095e-21
Selenicereus undatus Scaffold_33673 1 CH_sun_11 4 4 0.000000000080579
Selenicereus undatus Scaffold_3410 1 CH_sun_81 4 42 0.00000896703
Trochodendron aralioides group7 1 CH_tar_103 3 3 0.000000021627
Theobroma cacao Chromosome_5 1 CH_tca_298 2 2 0.0000732386
Tarenaya hassleriana NW_010967707.1 1 CH_tha_153 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_16 5 6 0.0000000000000827494
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_86 3 3 0.0000000129529
Vigna mungo CM024069.1 1 CH_vmu_402 2 2 0.000646141
Arabidopsis lyrata scaffold_3 2 CH_aly_379 2 2 0.000396027
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 2 CH_amhyb_38 3 3 0.000000106286
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_140 4 4 0.0000000000575611
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_141 4 4 0.0000000000575611
Amborella trichopoda AmTr_v1.0_scaffold00022 2 CH_atr_67 3 3 0.00000000946662
Brassica carinata ChrC05 2 CH_bca_111 4 5 0.000000000567851
Brassica carinata ChrC06 2 CH_bca_346 3 3 0.000000664186
Brassica carinata ChrB01 2 CH_bca_566 3 8 0.0000371686
Brassica carinata ChrC06 2 CH_bca_85 4 4 0.000000000113586
Brassica oleracea C9 2 CH_bol_40 4 4 0.00000000007491
Brassica oleracea C5 2 CH_bol_49 4 5 0.0000000003745
Brassica rapa A05 2 CH_bra_112 3 3 0.000000790707
Brassica rapa A10 2 CH_bra_24 5 5 0.000000000000032794
Brassica rapa A03 2 CH_bra_50 4 4 0.000000000169738
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_114 3 3 0.000000863699
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_41 5 14 0.0000000000887668
Camellia sinensis var. sinensis Chr6 2 CH_camsi_463 3 15 0.0000143411
Camellia sinensis var. sinensis Chr13 2 CH_camsi_833 2 2 0.000458547
Cannabis sativa NC_044379.1 2 CH_cansat_12 8 20 2.08933e-22
Cicer arietinum L. Ca_LG3_v3 2 CH_car_235 2 2 0.00023349
Coffea canephora chr6 2 CH_ccan_31 4 26 0.00000000000325836
Cardamine hirsuta Chr6 2 CH_chi_25 5 5 0.00000000000000102737
Citrullus lanatus CG_Chr04 2 CH_cla_157 2 3 0.000266123
Chenopodium quinoa C_Quinoa_Scaffold_3792 2 CH_cqu_62 5 8 0.0000000000245971
Chenopodium quinoa C_Quinoa_Scaffold_2876 2 CH_cqu_8 11 17 2.07945e-30
Capsella rubella scaffold_6 2 CH_cru_70 4 6 0.000000000263813
Daucus carota DCARv2_Chr5 2 CH_dca_437 2 2 0.000637775
Daucus carota DCARv2_Chr4 2 CH_dca_438 2 2 0.000637775
Eucalyptus grandis Chr01 2 CH_egr_245 4 7 0.0000000000210508
Erythranthe guttata scaffold_9 2 CH_egut_234 3 4 0.0000090957
Erythranthe guttata scaffold_10 2 CH_egut_24 7 10 2.41659e-18
Eutrema salsugineum scaffold_2 2 CH_esa_73 3 3 0.0000000347941
Fragaria x ananassa Fvb6-4 2 CH_fan_436 2 2 0.000185036
Fragaria x ananassa Fvb6-1 2 CH_fan_437 2 2 0.000185036
Fragaria vesca Fvb6 2 CH_fve_327 2 3 0.000176725
Glycine max Gm05 2 CH_gma_198 3 4 0.000000726018
Glycine max Gm08 2 CH_gma_232 3 5 0.00000181486
Lotus japonicus chr4 2 CH_lja_139 3 3 0.000000268461
Lotus japonicus chr1 2 CH_lja_66 4 5 0.000000000191961
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_506 2 2 0.000514007
Manihot esculenta Chromosome09 2 CH_mes_301 2 2 0.0000610631
Nelumbo nucifera chr2 2 CH_nnu_2 18 30 1.47373e-49
Nelumbo nucifera chr7 2 CH_nnu_241 3 3 0.00000834121
Nelumbo nucifera chr7 2 CH_nnu_264 3 4 0.000033351
Nicotiana tabacum Nitab4.5_0000016 2 CH_nta_130 2 3 0.000329164
Oryza sativa ssp. japonica chr05 2 CH_osa_44 4 5 0.000000000033143
Petunia axillaris Peaxi162Scf00285 2 CH_pax_8 6 7 2.71589e-19
Punica granatum NC_045131.1 2 CH_pgr_20 5 7 0.00000000000000499363
Pisum sativum chr7LG7 2 CH_psa_157 4 29 0.00000332339
Papaver somniferum NC_039364.1 2 CH_pso_153 4 10 0.00000000237449
Populus trichocarpa Chr06 2 CH_ptr_449 2 2 0.000346801
Phaseolus vulgaris Chr02 2 CH_pvu_63 4 4 0.00000000001785
Quercus lobata 7 2 CH_qlo_689 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_491 2 2 0.0000398653
Rhododendron simsii chr03 2 CH_rsi_48 5 6 7.80455e-16
Salvia bowleyana GWHASIU00000003 2 CH_sbo_189 3 3 0.000000888078
Salvia bowleyana GWHASIU00000002 2 CH_sbo_92 4 5 0.00000000101
Salix brachista GWHAAZH00000006 2 CH_sbr_301 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000019 2 CH_sci_51 3 3 0.0000000434974
Sechium edule LG14 2 CH_sed_10 7 10 9.97095e-21
Selenicereus undatus Scaffold_33673 2 CH_sun_11 4 4 0.000000000080579
Selenicereus undatus Scaffold_3410 2 CH_sun_81 4 42 0.00000896703
Trochodendron aralioides group7 2 CH_tar_103 3 3 0.000000021627
Theobroma cacao Chromosome_5 2 CH_tca_298 2 2 0.0000732386
Tarenaya hassleriana NW_010967707.1 2 CH_tha_153 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_16 5 6 0.0000000000000827494
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_86 3 3 0.0000000129529
Vigna mungo CM024069.1 2 CH_vmu_402 2 2 0.000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001