Functional clusters
Information
- Type MapMan
- Description External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF3)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_338 | 3 | 5 | 0.000213811 |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_87 | 4 | 4 | 0.0000000176647 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 1 | CH_arhy_202 | 4 | 13 | 0.0000000284644 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 1 | CH_arhy_377 | 3 | 7 | 0.0000103477 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 1 | CH_arhy_454 | 3 | 13 | 0.0000844963 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_78 | 5 | 14 | 0.00000000280574 |
| Brassica carinata | Contig281 | 1 | CH_bca_102 | 4 | 4 | 0.000000000370707 |
| Brassica napus | A03 | 1 | CH_bna_190 | 6 | 55 | 0.0000000632355 |
| Brassica napus | C06 | 1 | CH_bna_29 | 6 | 7 | 0.0000000000000155882 |
| Brassica napus | C07 | 1 | CH_bna_402 | 3 | 3 | 0.0000167825 |
| Brassica oleracea | C8 | 1 | CH_bol_321 | 3 | 7 | 0.000227414 |
| Brassica oleracea | C7 | 1 | CH_bol_422 | 4 | 51 | 0.000705596 |
| Brassica rapa | A03 | 1 | CH_bra_115 | 5 | 51 | 0.000000915717 |
| Brassica rapa | A08 | 1 | CH_bra_132 | 5 | 61 | 0.0000023124 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_168 | 3 | 3 | 0.00000326085 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_55 | 5 | 7 | 0.0000000000107912 |
| Cucumis melo | chr08 | 1 | CH_cme_6 | 9 | 18 | 1.48706e-24 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_65 | 8 | 80 | 0.000000000105818 |
| Cucumis sativus L. | chr5 | 1 | CH_csa_266 | 2 | 2 | 0.000250428 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_429 | 2 | 2 | 0.000637775 |
| Eucalyptus grandis | Chr03 | 1 | CH_egr_174 | 5 | 7 | 0.0000000000000388103 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_121 | 3 | 3 | 0.00000487118 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_48 | 5 | 9 | 0.000000000138617 |
| Gossypium hirsutum | A01 | 1 | CH_ghi_165 | 4 | 4 | 0.00000000135653 |
| Gossypium hirsutum | A08 | 1 | CH_ghi_166 | 4 | 4 | 0.00000000135653 |
| Gossypium hirsutum | D08 | 1 | CH_ghi_51 | 6 | 6 | 1.45089e-16 |
| Gossypium hirsutum | D01 | 1 | CH_ghi_82 | 5 | 5 | 0.000000000000452787 |
| Glycine max | Gm06 | 1 | CH_gma_48 | 5 | 7 | 0.000000000000420621 |
| Gossypium raimondii | Chr04 | 1 | CH_gra_18 | 6 | 6 | 9.20932e-18 |
| Lupinus albus | Lalb_Chr11 | 1 | CH_lal_52 | 4 | 5 | 0.000000000151781 |
| Manihot esculenta | Chromosome08 | 1 | CH_mes_364 | 2 | 2 | 0.000183189 |
| Medicago truncatula | chr2 | 1 | CH_mtr_1 | 19 | 39 | 7.90076e-51 |
| Medicago truncatula | chr2 | 1 | CH_mtr_80 | 6 | 7 | 0.00000000000000545749 |
| Nelumbo nucifera | chr3 | 1 | CH_nnu_109 | 4 | 17 | 0.000000194954 |
| Nicotiana tabacum | Nitab4.5_0000231 | 1 | CH_nta_104 | 2 | 2 | 0.000109727 |
| Petunia axillaris | Peaxi162Scf00175 | 1 | CH_pax_1 | 9 | 9 | 4.68495e-29 |
| Prunus persica | Pp01 | 1 | CH_ppe_371 | 3 | 21 | 0.000110832 |
| Phaseolus vulgaris | Chr10 | 1 | CH_pvu_463 | 2 | 2 | 0.000734727 |
| Rhododendron simsii | chr13 | 1 | CH_rsi_344 | 2 | 2 | 0.0000645307 |
| Salix brachista | GWHAAZH00000001 | 1 | CH_sbr_122 | 3 | 6 | 0.000000476427 |
| Solanum lycopersicum | SL4.0ch10 | 1 | CH_sly_235 | 3 | 5 | 0.00000619889 |
| Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_92 | 4 | 4 | 0.000000000127398 |
| Schrenkiella parvula | ch7-5 | 1 | CH_spa_3 | 6 | 7 | 4.00387e-17 |
| Solanum pennellii | Spenn-ch05 | 1 | CH_spe_172 | 3 | 3 | 0.000000489661 |
| Theobroma cacao | Chromosome_5 | 1 | CH_tca_206 | 3 | 4 | 0.00000112629 |
| Zea mays | 5 | 1 | CH_zma_51 | 3 | 3 | 0.00000000392171 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_338 | 3 | 5 | 0.000213811 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_87 | 4 | 4 | 0.0000000176647 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 2 | CH_arhy_202 | 4 | 13 | 0.0000000284644 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 2 | CH_arhy_377 | 3 | 7 | 0.0000103477 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 2 | CH_arhy_454 | 3 | 13 | 0.0000844963 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_78 | 5 | 14 | 0.00000000280574 |
| Brassica carinata | Contig281 | 2 | CH_bca_102 | 4 | 4 | 0.000000000370707 |
| Brassica oleracea | C8 | 2 | CH_bol_321 | 3 | 7 | 0.000227414 |
| Brassica oleracea | C7 | 2 | CH_bol_422 | 4 | 51 | 0.000705596 |
| Brassica rapa | A03 | 2 | CH_bra_115 | 5 | 51 | 0.000000915717 |
| Brassica rapa | A08 | 2 | CH_bra_132 | 5 | 61 | 0.0000023124 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_168 | 3 | 3 | 0.00000326085 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_55 | 5 | 7 | 0.0000000000107912 |
| Cucumis melo | chr08 | 2 | CH_cme_6 | 9 | 18 | 1.48706e-24 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_65 | 8 | 80 | 0.000000000105818 |
| Cucumis sativus L. | chr5 | 2 | CH_csa_266 | 2 | 2 | 0.000250428 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_429 | 2 | 2 | 0.000637775 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_174 | 5 | 7 | 0.0000000000000388103 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_121 | 3 | 3 | 0.00000487118 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_48 | 5 | 9 | 0.000000000138617 |
| Gossypium hirsutum | A01 | 2 | CH_ghi_165 | 4 | 4 | 0.00000000135653 |
| Gossypium hirsutum | A08 | 2 | CH_ghi_166 | 4 | 4 | 0.00000000135653 |
| Gossypium hirsutum | D08 | 2 | CH_ghi_51 | 6 | 6 | 1.45089e-16 |
| Gossypium hirsutum | D01 | 2 | CH_ghi_82 | 5 | 5 | 0.000000000000452787 |
| Glycine max | Gm06 | 2 | CH_gma_48 | 5 | 7 | 0.000000000000420621 |
| Gossypium raimondii | Chr04 | 2 | CH_gra_18 | 6 | 6 | 9.20932e-18 |
| Lupinus albus | Lalb_Chr11 | 2 | CH_lal_52 | 4 | 5 | 0.000000000151781 |
| Manihot esculenta | Chromosome08 | 2 | CH_mes_364 | 2 | 2 | 0.000183189 |
| Nelumbo nucifera | chr3 | 2 | CH_nnu_109 | 4 | 17 | 0.000000194954 |
| Nicotiana tabacum | Nitab4.5_0000231 | 2 | CH_nta_104 | 2 | 2 | 0.000109727 |
| Petunia axillaris | Peaxi162Scf00175 | 2 | CH_pax_1 | 9 | 9 | 4.68495e-29 |
| Prunus persica | Pp01 | 2 | CH_ppe_371 | 3 | 21 | 0.000110832 |
| Phaseolus vulgaris | Chr10 | 2 | CH_pvu_463 | 2 | 2 | 0.000734727 |
| Rhododendron simsii | chr13 | 2 | CH_rsi_344 | 2 | 2 | 0.0000645307 |
| Salix brachista | GWHAAZH00000001 | 2 | CH_sbr_122 | 3 | 6 | 0.000000476427 |
| Solanum lycopersicum | SL4.0ch10 | 2 | CH_sly_235 | 3 | 5 | 0.00000619889 |
| Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_92 | 4 | 4 | 0.000000000127398 |
| Schrenkiella parvula | ch7-5 | 2 | CH_spa_3 | 6 | 7 | 4.00387e-17 |
| Solanum pennellii | Spenn-ch05 | 2 | CH_spe_172 | 3 | 3 | 0.000000489661 |
| Theobroma cacao | Chromosome_5 | 2 | CH_tca_206 | 3 | 4 | 0.00000112629 |
| Zea mays | 5 | 2 | CH_zma_51 | 3 | 3 | 0.00000000392171 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |