Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.symbiont.arbuscule branching.transcription factor (MIG1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group22 1 CH_ach_244 2 2 0.000543213
Amborella trichopoda AmTr_v1.0_scaffold00166 1 CH_atr_42 4 7 0.0000000000526404
Cannabis sativa NC_044376.1 1 CH_cansat_119 3 4 0.00000010348
Capsicum annuum PGAv.1.6.scaffold100 1 CH_can_410 2 2 0.000495663
Corylus avellana 1 1 CH_cav_91 3 3 0.0000000352706
Coffea canephora chr3 1 CH_ccan_199 2 2 0.0000425891
Citrus clementina scaffold_9 1 CH_ccl_145 3 4 0.000000161493
Citrullus lanatus CG_Chr09 1 CH_cla_136 2 2 0.0000887115
Daucus carota DCARv2_Chr8 1 CH_dca_28 5 5 0.000000000000768008
Daucus carota DCARv2_Chr3 1 CH_dca_29 5 5 0.000000000000768008
Daucus carota DCARv2_Chr7 1 CH_dca_66 4 4 0.00000000185244
Davidia involucrata GWHABJS00000016 1 CH_din_474 2 2 0.000500125
Davidia involucrata GWHABJS00000014 1 CH_din_475 2 2 0.000500125
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_25 5 5 6.3863e-16
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_534 2 2 0.000942317
Fragaria vesca Fvb5 1 CH_fve_411 2 2 0.000353461
Fragaria vesca Fvb7 1 CH_fve_412 2 2 0.000353461
Helianthus annuus HanXRQChr02 1 CH_han_20 7 8 1.35009e-20
Helianthus annuus HanXRQChr13 1 CH_han_86 5 8 0.00000000000281123
Lonicera japonica GWHAAZE00000006 1 CH_lonja_38 6 6 1.45636e-18
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_44 5 5 0.00000000000000109957
Magnolia biondii Chr19 1 CH_mbi_613 2 2 0.000485661
Magnolia biondii Chr18 1 CH_mbi_614 2 2 0.000485661
Malus domestica Chr13 1 CH_mdo_496 2 2 0.000113763
Manihot esculenta Chromosome03 1 CH_mes_63 5 8 0.000000000000735602
Medicago truncatula chr2 1 CH_mtr_251 3 3 0.0000000253218
Petunia axillaris Peaxi162Scf00228 1 CH_pax_47 4 6 0.00000000109679
Prunus persica Pp01 1 CH_ppe_421 2 2 0.000223789
Populus trichocarpa Chr10 1 CH_ptr_51 5 5 0.00000000000000175821
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_673 2 2 0.000239192
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_792 2 3 0.000717541
Salvia bowleyana GWHASIU00000004 1 CH_sbo_1 16 35 2.94277e-45
Sequoiadendron giganteum chr6 1 CH_sgi_565 3 7 0.000000498292
Solanum lycopersicum SL4.0ch01 1 CH_sly_564 2 2 0.000880411
Solanum pennellii Spenn-ch01 1 CH_spe_443 2 2 0.000266874
Solanum tuberosum ST4.03ch01 1 CH_stu_192 3 3 0.000000330894
Theobroma cacao Chromosome_4 1 CH_tca_296 2 2 0.0000732386
Tripterygium wilfordii NC_052244.1 1 CH_twi_112 3 3 0.00000133343
Actinidia chinensis Lachesis_group22 2 CH_ach_244 2 2 0.000543213
Amborella trichopoda AmTr_v1.0_scaffold00166 2 CH_atr_42 4 7 0.0000000000526404
Cannabis sativa NC_044376.1 2 CH_cansat_119 3 4 0.00000010348
Capsicum annuum PGAv.1.6.scaffold100 2 CH_can_410 2 2 0.000495663
Corylus avellana 1 2 CH_cav_91 3 3 0.0000000352706
Coffea canephora chr3 2 CH_ccan_199 2 2 0.0000425891
Citrus clementina scaffold_9 2 CH_ccl_145 3 4 0.000000161493
Citrullus lanatus CG_Chr09 2 CH_cla_136 2 2 0.0000887115
Daucus carota DCARv2_Chr8 2 CH_dca_28 5 5 0.000000000000768008
Daucus carota DCARv2_Chr3 2 CH_dca_29 5 5 0.000000000000768008
Daucus carota DCARv2_Chr7 2 CH_dca_66 4 4 0.00000000185244
Davidia involucrata GWHABJS00000016 2 CH_din_474 2 2 0.000500125
Davidia involucrata GWHABJS00000014 2 CH_din_475 2 2 0.000500125
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_25 5 5 6.3863e-16
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_534 2 2 0.000942317
Eucalyptus grandis Chr08 2 CH_egr_907 2 2 0.000585274
Fragaria vesca Fvb5 2 CH_fve_411 2 2 0.000353461
Fragaria vesca Fvb7 2 CH_fve_412 2 2 0.000353461
Helianthus annuus HanXRQChr02 2 CH_han_20 7 8 1.35009e-20
Helianthus annuus HanXRQChr13 2 CH_han_86 5 8 0.00000000000281123
Lotus japonicus chr6 2 CH_lja_377 2 2 0.000429046
Lonicera japonica GWHAAZE00000006 2 CH_lonja_38 6 6 1.45636e-18
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_44 5 5 0.00000000000000109957
Magnolia biondii Chr19 2 CH_mbi_613 2 2 0.000485661
Magnolia biondii Chr18 2 CH_mbi_614 2 2 0.000485661
Malus domestica Chr13 2 CH_mdo_496 2 2 0.000113763
Manihot esculenta Chromosome03 2 CH_mes_63 5 8 0.000000000000735602
Petunia axillaris Peaxi162Scf00228 2 CH_pax_47 4 6 0.00000000109679
Prunus persica Pp01 2 CH_ppe_421 2 2 0.000223789
Populus trichocarpa Chr10 2 CH_ptr_51 5 5 0.00000000000000175821
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_673 2 2 0.000239192
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_792 2 3 0.000717541
Salvia bowleyana GWHASIU00000004 2 CH_sbo_1 16 35 2.94277e-45
Sequoiadendron giganteum chr6 2 CH_sgi_565 3 7 0.000000498292
Solanum lycopersicum SL4.0ch01 2 CH_sly_564 2 2 0.000880411
Solanum pennellii Spenn-ch01 2 CH_spe_443 2 2 0.000266874
Solanum tuberosum ST4.03ch01 2 CH_stu_192 3 3 0.000000330894
Theobroma cacao Chromosome_4 2 CH_tca_296 2 2 0.0000732386
Tripterygium wilfordii NC_052244.1 2 CH_twi_112 3 3 0.00000133343

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001